Usage:
 install/installng.pl [ options ] -info|install|list|update|reconfigure 

   1. Run install/installng.pl -install   == bootstrap installation package
   2. Edit /bio/biodb/install/install.conf.local to set configuration.
   3. Run install/installng.pl -update   == copy server packages
 Packages selected from packages.conf will by copied from servers.
 Start web servers with /bio/biodb/install/run-apache
 Web notes are at http://flybase.net/flybase-ng/

Commands:
  -info      == list package info 
  -install   == install new server set
  -list      == list package files at server
  -update    == update current server set
  -reconfig  == change to new install.conf.local configuration
  
Options:
  -root=/path/to/install  == override configure root
  -package=a,b, ... == use specific packages ('all' for everyone)
  -rsopts=-v,-n ... == apply rsync flags (-n=show dry-run, -v=verbose)
  -n, -norun    == don't do anything except show commands
  -v, -verbose  == show commands
  -h, -help     == this help
 
 configuration= APACHE_PORT=8081, DAPHNIA_CONF=#DAPHNIA_CONF, EUGENES_CONF=#EUGENES_CONF, EUGENES_PORT=7072, FLYBASE_CONF=#FLYBASE_CONF, FLYBASE_PORT=7082, GMODWEB_CONF=#GMODWEB_CONF, PACKAGES=biodb-root flybase, PGPORT=7302, ROOT=/bio/biodb, TOMCAT_FLYBASE=7882, TOMCAT_PORT=7880
 
 packages= DEFAULT biodb-common biodb-install biodb-root biodb-sources biodb-systems bionet-drosophila eugenes eugenes-data eugenes-indices flybase flybase-data flybase-etc flybase-indices


:::::::::: TEST RUN ::::::::::::::

install/install -root /usr/local/testbio -package flybase -install -no 
 

# INSTALL server directories
mkdir -p /usr/local/testbio/install
# OS=apple-powerpc-darwin
# INSTALL rsync://flybase.net/biodb/logs/
rsync -az --exclude-from=/usr/local/testbio/install/rsync.exclude --exclude-from=/usr/local/testbio/install/rsync.exclude.local rsync://flybase.net/biodb/logs/ /usr/local/testbio/
# INSTALL rsync://flybase.net/biodb/common/
rsync -az --exclude-from=/usr/local/testbio/install/rsync.exclude --exclude-from=/usr/local/testbio/install/rsync.exclude.local rsync://flybase.net/biodb/common/ /usr/local/testbio/
# INSTALL rsync://flybase.net/biodb/common/systems/
rsync -az --exclude-from=/usr/local/testbio/install/rsync.exclude --exclude-from=/usr/local/testbio/install/rsync.exclude.local rsync://flybase.net/biodb/common/systems/ /usr/local/testbio/
# INSTALL rsync://flybase.net/biodb/install/
rsync -az --exclude-from=/usr/local/testbio/install/rsync.exclude --exclude-from=/usr/local/testbio/install/rsync.exclude.local rsync://flybase.net/biodb/install/ /usr/local/testbio/install/
# INSTALL rsync://flybase.net/biodb/flybase/
rsync -az --exclude-from=/usr/local/testbio/install/rsync.exclude --exclude-from=/usr/local/testbio/install/rsync.exclude.local rsync://flybase.net/biodb/flybase/ /usr/local/testbio/flybase/
# INSTALL rsync://flybase.net/fbdata1/
rsync -az --exclude-from=/usr/local/testbio/install/rsync.exclude --exclude-from=/usr/local/testbio/install/rsync.exclude.local rsync://flybase.net/fbdata1/ /usr/local/testbio/flybase/data/
# INSTALL rsync://flybase.net/fbserver/server/.etc/
rsync -az --exclude-from=/usr/local/testbio/install/rsync.exclude --exclude-from=/usr/local/testbio/install/rsync.exclude.local rsync://flybase.net/fbserver/server/.etc/ /usr/local/testbio/flybase/etc/
# INSTALL rsync://flybase.net/fbserver/indices/
rsync -az --exclude-from=/usr/local/testbio/install/rsync.exclude --exclude-from=/usr/local/testbio/install/rsync.exclude.local rsync://flybase.net/fbserver/indices/ /usr/local/testbio/flybase/indices/
cp -p /usr/local/testbio/install/install.conf /usr/local/testbio/install/install.conf.local
mkdir -p /usr/local/testbio/common/
ln -s /usr/local/testbio/common/systems/apple-powerpc-darwin /usr/local/testbio/common/system-local

# RECONFIGURE packages
# not found: config file ROOT/conf/apache.conf 
# not found: config file common/servers/apache/conf/httpd.conf 
# not found: config file common/servers/tomcat/conf/server.xml 
# not found: config file common/servers/tomcat/webapps/*.xml 
# not found: config file daphnia/conf/apache.conf 
# not found: config file eugenes/conf/apache.conf 
# not found: config file flybase/cgi-bin/fblocalenv.pl 
# not found: config file flybase/conf/apache.conf 
# not found: config file gmod-web/conf/apache.conf 
# not found: config file install/run-apache 
# not found: config file install/run-postgres 
# not found: config file install/run-tomcat 
# not found: config file install/tomcatenv.sh