## flybase-ng packages list

#------- Common server packages ------------ 

package: argos-install
package-alias: biodb-install
description: flybase-ng installation package
url: rsync://flybase.net/argos/install/
localpath: install/
updateexclude:  run-apache run-postgres run-tomcat tomcatenv.sh

package: argos-systems
requires: argos-install  
description: flybase-ng system-specific packages
url: rsync://flybase.net/argos/common/systems/
localpath: common/systems/

package: argos-common
parts:  logs  common common/systems 
requires: argos-install  
description: flybase-ng common server packages
url: rsync://flybase.net/argos/
localpath: 
updateexclude: servers/apache/conf/httpd.conf \
 servers/tomcat/conf/server.xml \
 servers/tomcat/webapps/*.xml 
# updateexc has to use localpath/parts path

package: argos-root
package-alias: biodb-root
parts: ROOT docs  
description: flybase-ng root server package
url: rsync://flybase.net/argos/
requires: argos-common
localpath: 
updateexclude: conf/apache.conf
is-main: true

package: argos-sources
description: flybase-ng common server packages
url: rsync://flybase.net/argos/common/source/
localpath: common/source/
is-main: true

## exclude-from: file
## exclude: patt-list
## updateexclude: -- files edited in reconfigure.conf
## add more exclude choices? developer parts like ant ; esp. dev-docs ?
## add 'template' ?
## add ftp/http fetch of rsync? but rsync.samba.org has binaries

#------- FlyBase server ------------ 

package: flybase
description: FlyBase server package
url: rsync://flybase.net/argos/flybase/
requires: argos-common flybase-data flybase-etc flybase-indices flybase-blast
optional: bionet-drosophila
exclude: indices2
localpath: flybase/
updateexclude: conf/apache.conf cgi-bin/fblocalenv.pl
is-main: true

package: flybase-data
description: FlyBase public data files
url: rsync://flybase.net/fbdata1/
exclude: seqs/ maps/gnomap/
localpath: flybase/data/

package: flybase-etc
description: FlyBase miscellany data, configs, etc.
url: rsync://flybase.net/fbserver/server/.etc/
localpath: flybase/etc/
#exclude: gnomap/pix/** tomcat/ grmap/pix/ perlbio/ expdb/ gmod-fb/ jdata/ jdata3/ jlib/ mysql/ plib/ prefs/ tomcat/  japp/armview/ japp/ribbon/
exclude: gnomap/ tomcat/ grmap/pix/ perlbio/ expdb/ gmod-fb/ jdata/ jdata3/ jlib/ mysql/ plib/ prefs/ tomcat/  japp/armview/ japp/ribbon/
note: updates to flybase-ng in progress for this section; source out-of-date

package: flybase-indices
description: FlyBase data indices, database files
url: rsync://flybase.net/argos/flybase/indices2/
localpath: flybase/indices2/
# url: rsync://flybase.net/fbserver/indices/
# localpath: flybase/indices/

package: flybase-blast
description: FlyBase BLAST indices
url: rsync://flybase.net/flybaseftp/genomes/Drosophila_melanogaster/blastdb/
localpath: flybase/indices/blast/

package: bionet-drosophila
description: bionet drosophila news archive
url: rsync://flybase.net/fbserver/usenet/
localpath: flybase/usenet/
 

#------- euGenes server ------------ 
# changed from 'biodb' to 'argos' main public name; 17jun03

package: eugenes
description: euGenes server package
url: rsync://eugenes.org/argos/eugenes/
requires: argos-common eugenes-data eugenes-indices
localpath: eugenes/
updateexclude: conf/apache.conf
is-main: true

package: eugenes-indices
description: euGenes indices package
url: rsync://eugenes.org/eugenes/indices/
localpath: eugenes/indices/

package: eugenes-data
description: euGenes indices package
url: rsync://eugenes.org/iubio/eugenes/
exclude: *.gz
shouldbe-url: rsync://eugenes.org/ftp/eugenes/
localpath: eugenes/data/
# this is bad for eugenes data... fixme

#------- sample CentaurBase server ------------ 
#? home in flybase.net or eugenes.org

package: centaurbase
description: CentaurBase sample (mythical) service for Argos
url: rsync://flybase.net/argos/centaurbase/
requires: argos-common argos-root centaurbase-data
localpath: centaurbase/
updateexclude: conf/apache.conf
is-main: true

package: centaurbase-data
description: CentaurBase sample (mythical) data for Argos
url: rsync://flybase.net/flybaseftp/genomes/centaur/
localpath: centaurbase/data/