From asidhu from biomap.org Sun Feb 1 10:38:52 2009 From: asidhu from biomap.org (Amandeep Sidhu) Date: Mon Feb 2 08:11:08 2009 Subject: [Embl-databank] CFP: 4th Special Track on Ontologies for Biomedical Systems Message-ID: <2dbc82b00902010738r63c5b8abu4acce02a40c40242@mail.gmail.com> CALL FOR PAPERS ---------- 4th Special Track on Ontologies for Biomedical Systems 3-4 August 2009 Albuquerque, New Mexico http://cbms09.biomap.org/ 22nd IEEE International Symposium on Computer-Based Medical Systems http://cvial.ee.ttu.edu/cbms2009/ ---------- Biomedical Ontologies have developed in an uncoordinated way, often reflecting mere relations of 'association' between what are called 'concepts', and serving primarily the purposes of information extraction from on-line biomedical literature and databases. In recent years, we have learned a great deal about the criteria which must be satisfied if ontology is to allow true information integration and automatic reasoning across data and information derived from different sources. The goal of this track is to survey existing biomedical ontologies and reform them in such a way as to allow true information integration in biomedical domain. Authors are invited to submit original papers exploring the theories, techniques, and applications of biomedical ontologies. Papers are invited (but not limited) to the following themes: * Biomedical Ontologies for Genetics, Proteomics, Diseases, Privacy etc * Conceptual Models for Biological and Medical Data * Semantics in Biological Data Modeling * Use of semantics to manage Interoperation in Biomedical Databases * Semantic Web technologies and formalisms for Biomedical Data * Ontology representation and exchange languages for bioinformatics * Biomedical Ontologies and OWL * Biological Data Integration and Management using Ontologies * Biomedical Data Engineering using Ontologies * Application of Biomedical Ontologies for Heterogeneous Database Access * Query Optimization Techniques for Biomedical Database using Ontologies * Support of Ontologies for Biological Information Retrieval and Web Services * Change Management in Biomedical Ontologies * Tools for Development and Management of Biomedical Ontologies PAPER SUBMISSION: No hardcopy submissions are being accepted. Electronic submissions of original technical research papers will only be accepted in PDF format. Use a maximum of 6 pages IEEE two-column format, including figures and references. All submissions will be done electronically via the CBMS 2009 web submission system ( http://www.easychair.org/conferences/?conf=ieeecbms2009). Select the track "Ontologies for Biomedical Systems", provide the information about the paper title, authors, keywords, and corresponding author's information (telephone, fax, mailing address, e-mail address). Please note that author names should not appear on the paper. Submission implies the willingness of at least one of the authors to register and present the paper at the CBMS 2009 Symposium. All papers will be peer reviewed by at least two independent referees. All accepted papers will be included in the conference proceedings. Selected papers from the track will be published in Special Issue of International Journal of Healthcare Information Systems and Informatics (IJHISI) in 2010. IMPORTANT DATES: April 1, 2009 Paper Submission Due May 25, 2009 Notification of acceptance June 21, 2009 Final camera-ready paper due June 21, 2009 Pre-registration deadline You must pre-register to have your paper published in the proceedings. If you only plan to attend and are not submitting a paper, pre-registration is still strongly encouraged. TRACK CHAIRS: Amandeep S. Sidhu WA Centre for Comparative Genomics, Murdoch University, Perth, Australia Matthew I. Bellgard WA Centre for Comparative Genomics, Murdoch University, Perth, Australia Jake Chen Indiana University - Purdue University, Indianapolis, USA For further questions, please contact technical program chair at: cbms@biomap.org ---------- -------------- next part -------------- An HTML attachment was scrubbed... URL: http://www.bio.net/bionet/mm/embl-db/attachments/20090202/312bb36d/attachment.html From miki from life.ku.dk Mon Feb 2 05:03:07 2009 From: miki from life.ku.dk (Anders Miki Bojesen) Date: Mon Feb 2 08:11:19 2009 Subject: [Embl-databank] [Cph-bioinformatics] Post Doc in Bioinformatics In-Reply-To: <2dbc82b00902010811n514df0c5la3b3dbffa4bf0228@mail.gmail.com> References: <2dbc82b00902010811n514df0c5la3b3dbffa4bf0228@mail.gmail.com> Message-ID: <4986D2EB.6896.001D.0@life.ku.dk> Dear all Please pay attention to the 3-year Post Doc position in Bioinformatics at University of Copenhagen announced through this link: http://www.life.ku.dk/job.aspx (application deadline is 26th February) Best regards Miki Anders Miki Bojesen, DVM, PhD Department for Disease Biology Faculty of Life Sciences University of Copenhagen Stigb?jlen 4, 2. floor DK-1870 Frederiksberg C Denmark +45 35332671 (Phone) +45 35332757 (Fax) -------------- next part -------------- An HTML attachment was scrubbed... URL: http://www.bio.net/bionet/mm/embl-db/attachments/20090202/d204c6f8/attachment.html From articles.jvmah from acadjourn.org Tue Feb 10 02:52:11 2009 From: articles.jvmah from acadjourn.org (Journal of Veterinary Medicine and Animal Health) Date: Fri Feb 13 10:19:48 2009 Subject: [Embl-databank] Call for papers/Reviewers Message-ID: <1232b2f40902092352j6b8f7a9bk2c051e16eac2ddba@mail.gmail.com> *Journal of Veterinary Medicine and Animal Health*** www.academicjournals.org/JVMAH C Dear colleague** Call for papers/Reviewers *Journal of Veterinary Medicine and Animal Health** (JVMAH)’* Journal of Veterinary Medicine and Animal Health (JVMAH) publishes high-quality articles in English, in all areas of the subject. All papers published by JVMAH are peer reviewed. JVMAH is a very rapid response journal with an issue published every month. All articles published in JVMAH are peer-reviewed. The following types of papers are considered for publication: · Original articles in basic and applied research. · Critical reviews, surveys, opinions, commentaries and essays. Our objective is to inform authors of the decision on their manuscript(s) within four weeks of submission. Following acceptance, a paper will normally be published in the next issue. Instruction for authors and other details are available on our website www.academicjournals.org/JVMAH Prospective authors should send their manuscript(s) to JVMAH@acadjourn.org* * *Open Access* One key request of researchers across the world is unrestricted access to research publications. Journal of Veterinary Medicine and Animal Health(JVMAH)is fully committed Open Access Initiative by providing free access to all articles (both abstract and full PDF text) as soon as they are published. We ask you to support this initiative by publishing your papers in this journal. *Invitation to Review* JVMAH* *is seeking for qualified reviewers as members of the review board team. JVMAH serves as a great resource for researchers and students across the globe. We ask you to support this initiative by joining our reviewer’s team. If you are interested in serving as a reviewer, kindly send us your resume to JVMAH@acadjourn.org* * *Publication Alert* We will be glad to send you a publication alert showing the table of content with link to the various abstracts and full PDF text of articles published in each issue. Kindly send us an email if you will like to receive publication alert. Best regards, *Michael Oruah* *Editorial Assistant * Journal of Veterinary Medicine and Animal Health E-mail: JVMAH@acadjourn.org ** http://www.academicjournals.org/JVMAH* * -------------- next part -------------- An HTML attachment was scrubbed... URL: http://www.bio.net/bionet/mm/embl-db/attachments/20090210/938b6d72/attachment.html From mjang from ebi.ac.uk Thu Feb 26 09:42:51 2009 From: mjang from ebi.ac.uk (M. Jang) Date: Thu Feb 26 10:02:10 2009 Subject: [Embl-databank] EMBL Release 99 building process has started Message-ID: <1235659371.6529.152.camel@localhost> We have begun the process of building release 99 of the EMBL Nucleotide Sequence Database on Thursday 26th Feb 2009 Daily updates: For those who work with daily updates from the EBI ftp server (or mirror sites) the last update file for release 99 is placed: ftp://ftp.ebi.ac.uk/pub/databases/embl/new/r99u036.dat.gz The subsequent update file will contain post-release 99 data and be named: ftp://ftp.ebi.ac.uk/pub/databases/embl/new/r100u001.dat.gz The cumulative update file in ftp://ftp.ebi.ac.uk/pub/databases/embl/new/cumulative.dat.gz (and cum_* files) will continue to grow with new data until release 99 is built and is publicly available - we expect that to be around 10th Mar 2009. See http://www.ebi.ac.uk/embl/Documentation/changesdetails.html for more details. Thank you, Mikyung Jang EMBL-databank EMBL-EBI