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Demos

• Generic Genome Browser
• GMOD website
• Genome Renderer
• GMOD Standard Operating Procedures (SOPs)

Links to Related Projects

• FlyBase
• MGI
• SGD
• WormBase
• TAIR Schemas
• Rat Genome Database
• BioCyc
• Bioperl
• BioJava
• BioXML
• Gene Ontology Software
• DAS
• The Genomics Unified Schema
• Manatee: Manual Annotation Tool Etc, Etc...

GMOD is supported by a specific cooperative agreement from the USDA Agricultural Research Service, and by NIH grants co-funded from the National Human Genome Research Institute and the National Institute of General Medical Sciences.

Sample Configuration Files

This directory contains sample configuration files for GBrowse. To use them, simply copy them into gbrowse.conf, and edit the name of the database, username and password to reflect your database set up:

db_args       = -adaptor dbi::mysqlopt 
	        -dsn     dbi:mysql:database=fly;host=localhost
                                            ^^^change this
user          = nobody
                ^^^^^^ and this
pass          = secret
                ^^^^^^ and this

01.yeast.conf

Saccharomyces cerevisiae from SGD

02.wormbase.conf

Caenorhabditis elegans from WormBase

03.fly.conf

Drosophila melanogaster from FlyBase/BDGP

04.human.conf

Homo sapiens from various sources (download from www.gmod.org)

05.embl.conf

A proxy that automatically downloads whole accessions from Genbank/EMBL

06.biosql.conf

Sample configuration file for users of BioSQL

07.chado.conf

Sample configuration file for users of Chado

08.genbank.conf

Sample configuration file for data converted from GenBank/EMBL format using the bp_genbank2gff.pl script.