You can obtain this software via Internet, using anonymous ftp, gopher or http to the IUBio server at iubio.bio.indiana.edu. It is located in folder /molbio/seqpup. Versions are available for Macintosh, MS Windows, and various XWindows/Unix systems. Please check the Readme files at this archive for recent news. Remember to use binary FTP to fetch the .zip and .gz binary files.
Internet resource locators for this software are
<ftp://iubio.bio.indiana.edu/molbio/seqpup/>
<gopher://iubio.bio.indiana.edu/11/IUBio-Software+Data/molbio/seqpup/>
<http://iubio.bio.indiana.edu/1/IUBio-Software%2bData/molbio/seqpup/>
Source code for this software is at
<ftp://iubio.bio.indiana.edu/util/dclap/source/>
You will need to fetch one of the program archive files for your computer system, its associated child app archive, and fetch the essential and optional items from the "all-systems" folder. For example, this would be
all-systems/ SeqPup.help, SeqPup.prefs, tables/*, seqs/*
plus
mac/ seqpup-mac-68k.hqx and seqpup-mac-apps.hqx
or
mswin/ seqpup16.zip and spapp1.zip
or
unix/sun-sunos4-sparc/ SeqPup-sunos-mostat.gz and seqpup-apps.tar.gz
The current software distribution comprises the following items.
all-systems/ mac/ mswin/ unix/
all-systems/
SeqPup.help - help file (RTF format) essential
SeqPup-help.text - help file (plain text) optional
SeqPup.prefs - preferences file (plain text) essential
tables/ - data files used by SeqPup, essential
codon.table dro.cod hum.cod renzyme.table
color.table eco.cod rat.cod tob.cod
appsrc/ - source to applications called by SeqPup, optional
ChildApp.c captest.seq fastDNAml.doc
cap.src/ clustalw.doc fastDNAml.infile
cap2.doc clustalw.src/ fastdnaml.src/
seqs/ - test sequence files, optional
23+28SrRNA.gb captest.fasta fastdnaml.phylip
5srna.gb dros.ig testre.map6
blue.seq ecolac.seq testreseq.gcg
mac: - Macintosh, files are in binhex format
Readme
seqpup-mac-68k.hqx - SeqPup for Mac with Motorola 68000 processor
seqpup-mac-ppc.hqx - SeqPup for Mac with PowerPC processor
seqpup-mac-apps.hqx - child apps for mac, both 68k and PPC (fat binaries)
mswin: - MS Windows, files are in ZIP archive binary format
Readme
seqpup16.zip - Seqpup for MS Windows, 16-bit code
seqpup32.zip - SeqPup for MS Windows, 32-bit code
spapp1.zip - child apps for for mswin
unix: - Unix, files are in TAR, Gnu ZIP format
dec-alpha-osf/ - DEC Alpha computer with OSF/1 Unix
linux-elf-i86/ - Linux OS, ELF binary format, Intel 80x86 processor
sun-sol2-i86/ - Sun Solaris 2 on Intel 80x86 processor
sun-sunos4-sparc/ - Sun SunOS4 on SPARC processor (or Sol2)
sun-sol2-sparc/ - Sun Solaris 2 on SPARC processor
sgi-irix/ - Silicon Graphics Iris
unix/dec-alpha-osf:
Readme SeqPup.gz seqpup-apps.tar.gz
unix/sgi-irix:
Readme SeqPup.gz seqpup-apps.tar.gz
unix/sun-sol2-i86:
Readme SeqPup.Z seqpup-apps.tar.Z
unix/sun-sol2-sparc:
Readme SeqPup.gz seqpup-apps.tar.gz
unix/sun-sunos4-sparc:
Readme
SeqPup-sunos-mostat.gz - Motif libraries are included (will run on SunOS 4 or Solaris 2 lacking Motif libraries)
SeqPup-sunos-dyn.gz - Motif libraries are not included
seqpup-apps.tar.gz - child apps for SPARC