UREADSEQV1.030-DEC-1992 14:22VAX C V3.2-044PABCDEFGHIKLMNPQRSTVWXYZ*PPACGTU PPEFIPQZ P P_.-? P_.-*? P_.-*?<>{}[]()!@#$%^&=+;:'/|`~"\P P0123456789P~!@#$%^&*(&P %d) %s 0P//3P; DNA sequence DPENTRYJP///NPENTRYTPSEQUENCE]PSEQUENCEfPENTRYlPLOCUSrP//uPORIGIN|PLOCUSPID P//PSQ PID P%s [Unknown form]P [Unknown form]P Length: P..P): Pidentity: Data:PName: P//PmatrixPmatrixPmatrixPinterleavPntax=Pnchar=Pmatchchar= P..#Pr%Pr'PFrom -PReceived:7PMSF:<PType:BPCheck:IP..LPCheck:SPidentity: Data:eP::=iPBioseqpPSeq-entryzPSeq-submitP#NEXUSPStriderPLOCUSPORIGINPENTRY PSEQUENCEPID PSQ P%d%dPBioseq-setPSeq-entryP): P%d%dP0w,aQ mjp5c飕d2yҗ+L |~-d jHqA}mQDžӃVlkdzbeO\lcc=  n;^iLA`rqgjm Zjz  ' }Dңhi]Wbgeq6lknv+ӉZzJgo߹ホCՎ`~ѡ8ROggW?K6H+ L J6`zA`Ugn1yiFafo%6hRw G "/&U;( Z+j\1е,[d&c윣ju m ?6grWJz+{8 Ғ |! ӆBhn[&wowGZpj;f\ eibkaElx TN³9a&g`MGiIwn>JjѮZf @;7SŞϲG0򽽊º0S$6к)WTg#.zfJah]+o*7 Z-P%30sP%dPchecksumPbasesP PLOCUS %s %d bp PDEFINITION %s, %d bases, %X checksum. @PORIGIN NP //RPENTRY %s gPTITLE %s, %d bases, %X checksum. PSEQUENCE P ///P%10dP>P1;%s P>DL;%s P%s, %d bases, %X checksum. P* PID %s PDE %s, %d bases, %X checksum. PSQ %d BP P //"P%s &P %s Length: %d (today) Check: %d .. RP TP; ### from DNA Strider ;-) pP; DNA sequence %s, %d bases, %X checksum. ; P //P%s, %d bases, %X checksum. P%-10s PdnaPrnaPnaPaaPnot-setP seq { P id { local id %d }, P descr { title "%s" }, P inst { %P repr raw, mol %s, length %d, topology linear, ZP seq-data jP iupacaa "|P iupacna "P" } } ,P[Name: %-16s Len:%6d Check: %8X] PName: %-16s Len:%6d Check: %8X P Name: %-16s Len:%6d Check: %5d Weight: 1.00 P%%+%ds P;%s, %d bases, %X checksum. 8P%s <P1>P>%s, %d bas C$V_CTYPEDEFS GETSEQTYPE CRC32CHECKSUM GCGCHECKSUMSEQFILEFORMATFPREADSEQ ISANYCHAR ISSEQCHAR GETSEQTYPESEQFILEFORMATFPSTRSTRSTRLENSTRCHRSTRCMPSTRCATSTRNCPYSTRCPYREWINDFTELLFSEEKFPUTCSPRINTFFPRINTFSSCANFFGETSFCLOSEFOPENREALLOCATOLATOIATOLATOIATOICALLOCCALLOCREALLOCMALLOC  STRCASECMPes, %X checksum. [P%%%d.%ds eP%%%ds lP%%%dd sP vP%-9d |P%sP%s%sP%sP^ѬPTPQaQQz QP PRPQRRSQaQQz QP PRQRRPPPPSSPЬP`T P֬TP^ѬPTPQaQQz QP PRPQRRSQaQQz QP PRQRRPPPPSSPЬP`TP֬׬ TTP^RˏP@PݬSTRCHRPRRP^RˏP@PݬSTRCHRPRRP^PѬP^޼ RݬFTELLPbݬ<~ЬRRFGETSPbP RSTRCHRP`P ^ЬPР)R1n-SRFTELLPcR<~ݮFGETSPP ݮSTRCHRP`^ЬPݠ-)FSEEK^ެTdR(c^S~5PCdRѢ )  ~ݢREALLOCPQ ЬPQdPРQ֠A֬P^*TSЬRb~5PdP֠RP<^TU  P֬ ݬЬR2~ߤ&USPRINTF(S( ISANYCHAR5RUS( ISSEQCHAR5^WЬSc(RcR3R((ԣ S1ϣެUeS޼ VSPР)R1n-TRFTELLPdR<~ݮFGETSPP ݮSTRCHRP`г)P PRPRR&SfP&(2eP&%eR1STRLEN2QPQR1PQP~&1RЬUeWХ SUTVc  PSc S2~ߧ&VSPRINTF(R( ISANYCHAR5TVϙR( ISSEQCHAR5PReR3R%URݢ-ݢ)FSEEK ^S1Ь R1STRCHRP21STRCHRPSSPP^ެUeR%1eSFTELLXFGETSWSTRCHRVSPР)R1n-TRhPdR<~ݮgPP ݮfP`1P``  `P`` `eP1г)P eP11;г)R eR% PeR1ݢ STRCPYR|~_%1KP^Rߢ0Ь P1STRSTRQPQQPPPP ^WެVfR%10UFTELLZFGETSYSTRCHRXSTRCPY[UPР)R1n-SRjPcR<~ݮiPP ݮhP`ߧ31STRSTRPQ1PQPfP1QQ~ݠ kPfP1QQQݠ kе)P ^fP1;USSPР)R1-TRjPdR<~ݮ iPP ݮhP`г)P fP1;ϵ)P fP%Pfϒ%1|^UЬVߥDЬ S1STRSTR垣1QRPQRRfTߥJ1STRSTRPfTTPP^UެWgR%1gXSTRSTRVFTELL[FGETSZSTRCHRYnи)R 1ߥNgR1fPtߥT1fPggTTPР)R1 -SRkPcR<~ݮjP P ݮiP`д)P ߥNgRܟ1fP ߥT1fP1RR~ݨ RUREADSEQ Strcasecmp Strncasecmp isSeqChar7@ isSeqNumChar7x isAnyCharreadlineFgetlineO$ ungetline @addsequcountseq5addinfodTreadLoop endIG9 readIG endStrider24 readStriderL endPIRRreadPIRSTRCPYи)R xߥ]gR1f1RPRcЧSSPР)R1-TRkPdR<~ݮjPP ݮ iP`г)P ߥ]gR1fPQ1PQPXݮ|~%1gSг)R 1~1ߥf1f1RPRggSSPР)R1-TRkPdR<~ݮ jPP ݮiP`г)P gR1ߥf1fPQ1PQPи)R gR%%1$P|^UЬVߥlЬ S1STRSTR垣1QRPQRRfTߥr1STRSTRPfTTPP^UެWgR%1qgVSTRSTRXFTELL[FGETSZSTRCHRYn1R R~ݦ STRCPYж)R xߥugR1h1RPRcЧSSPР)R1-TRkPdR<~ݮjPP ݮ iP`г)P ߥugR1hPQ1PQPVݮ|~-%1gSг)R 1~1ߥ|1h1RPRggSSPР)R1-TRkPdR<~ݮ jPP ݮiP`г)P gR1ߥ|1hPQ1PQPж)R gR%%1P^*Ь R1STRCHRP `P1> PPP ^ެVfR%1fUFTELLYFGETSXSTRCHRWޯZ1PP~ݥ STRCPYUPР)R1n-SRiPcR<~ݮhP ݮgP`UZ|~Ϸ%ofRв)P c11>XfSSPР)R1-TRiPdR<~ݮ hPP݀ ݮgP`г)P fP11>е)P fP%%1P^Ь PQ1>QQPP<^ެTdR%1dSޯU1RRRݣ STRCPYSU|~%BdQб)R 611>+dRRP-1ݠ)в)P dP1ޑ1>г)R dR%%P|^UЬVłЬ S1STRSTR䞣1QRPQRRfTň1STRSTRPfTTP^WެZjR%19jVSTRSTRYޯ[P1RR~ STRCPYVP-1ݠ)ж)P PQPQQSNj1iPR1PQRPQQSV[|~ό%1jTд)R RSRSSXS1SSUǑ1i1RSPRSUUUSUUX]TTP-1ݠ)_д)P PQPQQUQ1QQSǑ1iPR1PQRPQSSSQSSUж)R jR%%1P^Ь PQ1(QQPP^ެVfR%1fUޯWUR-1ݢ)ϯ1RR~ݥ STRCPYUW|~Z%}fSг)R RPRP1SRcRTc(TRRRTRRPGfSSP-1ݠ)Cг)P PTPT1QPaPRa(RPPPRPPTе)R fR%%18P^Ь PQ1 QQPP<^TެScR%AcRޯUTcP1ݠ STRCPYRUT~^в)P cP%T%P|^VЬSRcR3R(ԣSݣ գݣƗݣ SPRINTFƪݣ SPRINTFRR1в)P PQPQQ&RP-1ݠ)&ЬRbSТ SRTUc  PSc S2~ߦ&USPRINTF(R( ISANYCHAR5TUMR( ISSEQCHAR5ЬR%|^VЬSRcR3R(ԣ1ݣ STRCPYƻݣ STRSTRP`Pݣ STRSTRP`ެSУRв)P PQPQQ&RP-1ݠ)& cPP1ϓ&ЬRbSТ SRTUc  PSc S2~ߦ&USPRINTF(R( ISANYCHAR5TU=R( ISSEQCHAR5ЬR%Ψ^ZYެоSRcR3R(ԣݣ)REWINDоSTRSTR STRCHRSTRCPYЮP-1ݠ)ЮRв)R RSRSЮRS& оR111߭оR1PS1߭1P1VSRPR1 S߭SPP`SRb0PbQQ .bPQPPP@i QP0P@jbRbݾS1ZPоW1PU1(1P[ egY[SWTXc Sc S2~&XSPRINTF(R( ISANYCHAR5TXzR( ISSEQCHAR51Pg1[ݧ  :ݧ PQa q QоRQ Pa _aQQ eu eu [߭ оR1P` `PP` `VF` VF`FVF` VF#PΟ1Pg&оR&1ЬR%l^ZXԮ ެ[kSRcR3R(ԣݣ)REWINDkYSTRSTRSTRCPYYP-1ݠ)kй)P PRPRR& kP11xskP1Sc cPSc cSTdPPRBhPPTdPPP@hPdc1|SSTRCMPP kT~ύ֮ 1PkT1PW1WdUWRTS|Vb Rb R2~ߪ&VSPRINTF(U( ISANYCHAR5SVU( ISSEQCHAR5PdwWݤ  Ф Sc c Sc cSRbPPP@hPPRbPPP@hPbS| !1PԮ d&kP&1TЬR%Ό^YԮZެоSRcR3R(ԣ(ԣ R$RR о[STRCPYSTRLENSTRSTR [P-1ݠ)Oл)P PRPRR& оP11 1_оP1Ue e PUe e;USTRCHRP ePPRBiP1C1@оPUTdPPRBiPTdPPP@iPTd d Td dоVf^URVSͭXb  PRb R2~&XSPRINTF(W( ISANYCHAR5SXW( ISSEQCHAR51VPf1K ?TͭͭPZ"PZQ@d$@ͭ@dPPZоRRTz蔾Uݢ U߭1߭߭1P߭UPU1ePPRBiPPUePPP@iPe e Ue e EоPUͭͭPZ$PPZQ@e$@ͭ@ePPZݾUϭ+P #߭UPUUͭͭPZ֮*PоR1P Ԯb&оP&11ЬR% ^[WZެYiSRcR3R(ԣԣiXXR-1ݢ)?и)R  endGBRH  readGenBank endNBRF: readNBRF,  endPearsonL  readPearson endEMBLT8readEMBLUendZuker readZukerendFitch readFitchV readPlain  readUWGCG readOlsenreadMSF readPAUPinterleaved<readPAUPsequential RSRSS& iR111iR1Vf f Vf f;VSTRCHRPfRRRBgR1kZ1iRԢZVUeRRRBgRPUePPP@gPiTd;11}ƳgRPR1`ƹgTPT1Dd(18üZRR*|߭߭ƿSSCANFխLխG AP :R5 T~kPR R~2P苏RRRBiR խSTRPSUPRRRPRPPzSP{PQPPRC RRRRTPRC RRRRTSTRPSUPRRRPRTRPUPRRRPRU2PPP)P% ?P֮PU֮ PU֮$ FX1G  FX17;gP4FPgP 3FPFX1P FX1 "FFX1PѮ$ X Z1F1#F1F|FpFd"FXFL F@ F4F(ծFPѮ$ FѮ FFXgP֭X1F 1|ԮL[ެ(ݾ(REWINDUެTUB(WgR RSRSSX߭WՕX STRLENZUUԮ,ЬTdR RSRSSX߭TτՕXSTRLEN֮,߭߭SSCANFЬTdR RSRSSX߭T7ՕXSTRLEN֮,R RSUcPcRRRBiRhRUScH19Ь0STRLENZ GETSEQTYPE4о0R RSRSSX߭ݮ8ϴԕX j֮,R R~jPR R~<2PW <2PQTScRRRBiT PSTcRRRBiT P``RRRBiRhRUP`T  ["PWQ֮LP[QQ[֮LU+T &Q L$Q QQ[֮L PUU֮HѮH1ѮH1Ь8STRLEN< GETSEQTYPE@о8R RSRSSX߭ݮ@hӕX @֮,R R~@PR R~H2PZ H2PWQaaRRRBiRhRUQaTScRRRBiT STcRRRBiT T 'W [ZW[֮LWW֮LP[UT  LW [U֮HѮH1ѮL[ FP F2FP^|SRެWRgEUVSaBfBz BP PQBQQPPPSPPTS9SRRgűzTP{'PQPPTЬ STcQcPЏ'RRRPRQPQ{RPPQQcTP<^UQЬRRSRPSXPЬR֬abЬR֬bzЬR֬bR RT PЬR֬bTTSQSʏSQRCeRQPRPȐQQ QP^ |ZԮ |XЬRя,R<,SRSSW1ެTdSTRCHRV2WQaAAz AP PRPARRUUSS fPZkPS fP UT LPUUC>SfP[*SfPYUUP@PXWW1LX2ZR2[PPR2 PPRPZP[ PP [P2P^ԼլP ~MALLOCPTPЬPTRS`P``SP`bS~TREALLOCPTSTP^Y*2 O[Ԯ ԭߑ P֬ ݬSTRLENяPSݬSTRLENPSSRRݬOSTRNCPYBk߭[SSCANFݬ ASPRINTFASTRLENPRRnK[STRSTRP/[STRSTRPXX[h, XX[h,X[h߭STRCPYZ 1ЬWЬ Vޭ|SRV:SBgQaQQz QP PUQUUPPPSPPTS9SRRVzTP{'PQPPTTQоPЏ'RRRPRQPQ{RPPQQT jЬUЬ WޭVSWRRTRT@az T TQPQQPSPʏPST@TSRTRT̏SSfS 2PPG4P1P?P߭STRCPY1Pݬ ߭ЬSSFPRINTFRbݮ ݬ [Sb@Sb *N߭STRCPY2RRR1߭RެUeSSFPRINTFRbݮ ݬ [gSbɓSbn *ɥ߭STRCPYR2nTRTe FPUTCRRTS2RSRPSɪݬFPRINTFRSݬ FPUTC2RRR1ݬ ݬ GETSEQTYPEP߭ɯݬFPRINTFP߭ɷݬFPRINTFݮ ݬ [ɿݬFPRINTF *߭STRCPY2RRR1߭ЬSSFPRINTFRbݮ ݬ [Sbݬ Sb߭STRCPY۰ *<2RRR14["ݬFPRINTFݮ ݬ ߭&ݬFPRINTF *R߭STRCPY2RRR1TݬFPRINTFݮ ݬ [pݬFPRINTFɞ߭STRCPY2RRR1ݮ ݬ [ɢݬFPRINTF*<2RRR1}߭STRLENP ߭ɾݬFPRINTFZ *1KPݬ ݬ GETSEQTYPEPU2UPPE7P.?PXXXXXЬTTFPRINTFSc2~TcݬTcTcݬ X%TcZTcUjTc P|TcZ*N Ɏ߭STRCPY2RRR1a *d ݮ ݬ ߭ɜݬFPRINTF2RRR1(2RRR* 1ݮ ݬ ߭ݬFPRINTF嶮1Pݮ ݬ ߭ݬFPRINTF趮2~KSPRINTF߰ *2 gPݮ ݬ [ݬFPRINTF߭8ݬFPRINTF<߭STRCPY2RRR"Pݮ ݬ [>ݬFPRINTF2RRRK2RRR[KSPRINTF2n~eASPRINTFP2n~lASPRINTF 7STRCPY] ~7STRCHRP&s7STRCAT7STRLENP @7  ~7STRCHRP `ޭRbRPRRXU$ެ X 1oެVFPRINTF[FPUTCW2ZZVZR ߭Kfk"uAfkPݮ$AfkR2 SRSf gRRSZ1**2UR2*SzRP{SPQPPRRf gURU BUzZP{ PQPPRR 2RZR" X~vfkURU|BU URU BUXl**%UR2*SzRP{SPQPPRR URU BU֮$޼RHb~7STRCHRP֮$UTUXRX޼SBcDUZ X 1P2TZTGP**%UR2*SzRP{SPQPPRR URU BUURU BUZZTEUUZjU|fk[X ߭Ufk UɄfkf g$~Afk ߭Kfkf gX 12P;7P5%-!4P3GKc++G3#)P))1 P<TlhHx48readPhylipInterleavedendPhylipSequentialHreadPhylipSequential  readSeqMainx# readSeqFpd$readSeqD%listSeqs,p% seqFileFormat@%seqFileFormatFpp  / GCGchecksum/ CRC32checksumH0 getseqtype<1 compressSeq`1writeSeq 73ԜޡלޡלǼ ޻   ;  STRNCASECMP  ISSEQCHAR @ ISSEQNUMCHAR x ISANYCHAR # READSEQFP d$READSEQ D%LISTSEQS p% SEQFILEFORMAT %SEQFILEFORMATFP / GCGCHECKSUM /< CRC32CHECKSUM H0 GETSEQTYPE 1 COMPRESSSEQ 1WRITESEQ<$CODE$DATASTDINSTDOUTSTDERR_CTYPE_GPRETTYAMINOS$CHAR_STRING_CONSTANTSPRIMENUCPROTONLYKNOCOUNTSYMBOLS STDSYMBOLS ALLSYMBOLS NUMMASK NONUMMASKCRCTAB0`