# prefs/color.prefs
#
# Base colors file for seqpup
#
# Text following a pound (#) or an exclamation (!) is a comment that is ignored
##----------------------------


# base=color value .. add color for each base desired in set [' '..'~']
# color value is hex or decimal 2byte-red/2byte-green/2byte-blue
# use '0x...' for hex format
# put two values for each character, for distinct upper & lower case colors
# e.g., 
!nucleic.A=0xff0000  0xff8080 # red for A, lt. red for a

#[nucleic]
# nucleic acid colors
nucleic.A=0xff0000  0xff4040 # red
nucleic.C=0x0000ff	0x4040ff # blue
nucleic.G=0x00c000	0x40c040 # green
nucleic.T=0xa0702f	0xa0904f # orange
nucleic.U=0xa0702f	0xa0904f # orange


## some color values
#0xff00ff	# magenta
#0x000000	# black
#0xff0000	# red
#0x0000ff	# blue
#0x00c0c0	# lt.blue
#0x00c000	# green
#0x090909	# gray

#[amino]
# amino acid colors
# base=color value ..add color for each base desired in set [' '..'~']
amino.A=0xff00ff	# magenta
amino.B=0x000000	# black
amino.C=0xff0000	# red
amino.D=0x000000	# black
amino.E=0x000000	# black
amino.F=0x0000ff	# blue
amino.G=0xff00ff	# magenta
amino.H=0x00c0c0	# lt.blue
amino.I=0x00c000	# green
amino.J=0x090909	# gray
amino.K=0x00c0c0	# lt.blue
amino.L=0x00c000	# green
amino.M=0x00c000	# green
amino.N=0x000000	# black
amino.O=0x090909	# gray
amino.P=0xff00ff	# magenta
amino.Q=0x000000	# black
amino.R=0x00c0c0	# lt.blue
amino.S=0xff00ff	# magenta
amino.T=0xff00ff	# magenta
amino.U=0x090909	# gray
amino.V=0x00c000	# green
amino.W=0x0000ff	# blue
amino.X=0x090909	# gray
amino.Y=0x0000ff	# blue
amino.Z=0x000000	# black