( ( ( ( ( ( ( ( ( 'Hf.volcani', ( 'Hc.morrhua', ( 'Hb.cutirub', 'Hb.halobiu' ) ) ) 'Halobacteria', ( ( ( 'Msp.hungat', 'Mcr.parvum' ), ( ( 'Mg.marisni', 'Mg.thermop' ), ( 'Mm.mobile', ( 'Mpl.limico', ( 'Mg.organop', 'Mg.cariaci' ) ) ) ) ) 'Methanomicrobiales', ( ( ( ( ( ( 'Msr.barker', 'Msr.acidiv' ), 'Msr.thmoph' ), ( 'Msr.frisiu', 'Msr.sp.WH1' ) ), ( 'Mlo.tindar', ( 'Mco.mluten', ( 'Mha.mahii', 'Mha.sp.SF1' ) ) ) ), 'Mha.zhilin' ), ( 'Mst.thermo', 'Mst.sohnge' ) ) 'Methanosarcinales' ) ), 'Arg.fulgid' ), 'Tpl.acidop' ), ( 'Mt.fervidu', ( 'Mb.tautotr', ( 'Mpr.stadtm', ( 'Mbb.arbori', ( 'Mb.bryanti', 'Mb.formici' ) ) ) ) ) 'Methanobacteriales' ), ( 'Mc.jannasc', ( 'Mc.igneus', ( 'Mc.thlitho', ( 'Mc.voltae', 'Mc.vanniel' ) ) ) ) 'Methanococcales' ), 'Tc.celer' ) 'Euryarchaeota', ( ( 'Thp.tenax', 'Tmf.penden' ), ( 'Pyr.occult', ( 'Sul.solfat', 'Dco.mobili' ) ) ) 'Crenarchaeota' ) 'Archaea', ( ( 'Tt.maritim', ( 'Tsi.africa', ( 'Fer.icelan', 'Fer.nodosm' ) ) ) 'Thermotogales', ( ( 'Tmc.roseum', ( 'Cfx.aurant', 'Her.aurant' ) ) 'Green Nonsulphur', ( ( 'T.thermoph', 'D.radiodur' ) 'Deinococcus Group', ( ( ( ( ( ( ( ( ( ( ( 'Spi.aurant', ( ( 'Spi.litora', 'Spi.isoval' ), 'Spi.haloph' ) ), 'Spi.pl12my' ), 'Bor.burgdo' ), ( ( ( 'Trp.CA', 'Trp.succin' ), 'Trp.bryant' ), ( ( 'Trp.pallid', ( 'Trp.phaged', 'Spi.zuelze' ) ), 'Spi.stenos' ) ) ), 'Trp.11616' ), 'Srp.hyodys' ), ( 'Lps.sp183', 'Lpn.illini' ) ) 'Spirochetes', 'Fls.sinusa' ), ( 'Clm.psitta', 'Pln.staley' ) 'Plancromyces' ), ( ( ( ( ( ( ( ( ( ( ( ( ( 'Flx.flexil', 'Flc.major' ), 'Cy.hutchin' ), ( ( 'Flx.ele.NZ', 'Msc.marina' ), 'Flx.ruber' ) ), 'Run.slithy' ), 'Flx.roseol' ), 'Sps.lingua' ), ( 'Flc.marinu', ( ( 'Flx.tractu', 'Msc.serice' ), 'Msc.furves' ) ) ), ( 'Flx.polymo', 'Flx.litora' ) ), 'Cy.difflue' ), ( ( ( 'F.spiritiv', ( 'F.thalpoph', 'Sph.mizuta' ) ), 'Cy.heparin' ), 'Flx.canada' ) ), ( ( ( 'Flx.ele.FX', 'Flx.sancti' ), 'F.ferrugin' ), ( 'Sap.grandi', 'Hal.hydros' ) ) ), ( ( ( ( ( ( 'F.balustin', 'F.indolthe' ), 'F.meningos' ), ( 'F.gleum', 'F.indologe' ) ), 'F.breve' ), ( ( ( ( ( ( 'Ant.vesicu', 'Flc.glomer' ), 'Flx.aggreg' ), ( ( 'Cy.lytica', 'Cy.latercu' ), 'F.uliginos' ) ), ( ( ( ( ( 'Flx.column', 'Cy.johns.d' ), 'Cy.aquatil' ), 'Cy.flevens' ), ( ( 'Flx.aurant', 'Cy.johns.a' ), 'F.aquatile' ) ), 'F.odoratum' ) ), 'Msc.aggreg' ), 'Cy.marinof' ) ), ( ( ( ( 'Bac.fragil', 'Bac.thetai' ), 'Bac.vulgat' ), 'Bac.distas' ), 'Cy.ferment' ) ) ) 'Flavobacteria', ( 'Chl.vibrio', ( 'Chl.tepidu', ( 'Chl.limico', 'Clt.sulfur' ) ) ) 'Green Sulphur' ) ), ( ( ( ( ( ( ( ( ( ( 'Rps.marina', ( ( 'Ag.tumefac', ( 'Roc.quinta', 'Bru.aborts' ) ), ( ( 'Anc.aquati', ( ( 'Rps.palust', ( ( 'Bei.indica', 'Rps.acidop' ), ( ( 'Mls.methan', 'Msi.tricho' ), 'Mcy.parvus' ) ) ), ( 'Mlb.DM4', 'Mlb.extorq' ) ) ), ( 'Rm.vanniel', 'Hyp.vulgar' ) ) ) ), ( 'Erb.sp.114', 'Rb.capsula' ) ), 'Ps.diminut' ), ( 'R.salexige', ( 'F.devorans', ( 'Erb.longus', 'F.capsulat' ) ) ) ), ( 'Ehr.ristic', ( ( 'Ric.ricket', 'Ric.prowaz' ), 'Ric.typhi' ) ) ), ( 'R.rubrum', ( ( ( 'R.molischi', 'R.fulvum' ), ( 'Azs.lipofe', 'R.centenum' ) ), ( 'Rpl.globif', ( 'R.sodomens', 'R.salinarm' ) ) ) ) ) 'Alpha Purple', ( ( ( ( ( ( ( 'Rcy.purpur', ( ( 'Rcy.gelati', 'Ps.testost' ), ( 'Alc.eutrop', 'Ps.cepacia' ) ) ), ( 'Nmn.europa', 'Nlb.multif' ) ), 'Spr.voluta' ), ( 'Alc.xyloso', 'Alc.faecal' ) ), 'Crb.fluvia' ), ( 'Mlp.methyl', ( 'Crb.violac', ( 'Vit.sterco', ( 'Nis.gonorr', ( 'Kin.kingae', ( 'Sim.muelle', ( ( 'Eik.corrod', ( 'Eik.corro1', ( 'Eik.corro2', 'Eik.corro3' ) ) ), ( 'Nis.dentri', ( 'Kin.denitr', 'Nis.elonga' ) ) ) ) ) ) ) ) ) ) 'Beta Purple', ( ( 'Xan.maltop', ( 'Mlc.capsul', 'Mlm.methan' ) ), ( ( 'Xyl.fastid', ( 'Ec.shaposh', ( 'Ard.oleife', ( 'Ec.halochl', 'Ec.halophi' ) ) ) ), ( 'Cox.burnet', ( ( 'Chr.tepidm', 'Chr.vinosm' ), ( 'Car.homini', ( 'Wlb.persic', ( 'Leg.pneumo', ( ( 'F.halmophi', ( 'Acn.calcoa', ( 'Ps.aerugin', ( 'F.lutescen', 'Ps.mendoci' ) ) ) ), ( 'Osp.linum', ( 'Rum.amylop', ( 'Arm.hydrop', ( ( 'Pas.multoc', 'H.influenz' ), ( 'V.parahaem', ( ( 'Ple.shigel', 'sym.Acy.pP' ), ( 'P.vulgaris', ( ( ( 'Haf.alvei', 'Yer.entero' ), 'sym.Acy.pS' ), ( 'Er.herbico', ( ( 'Er.carotov', 'Ser.marces' ), ( 'E.coli', 'Cit.freund' ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) ) 'Gamma Purple' ) ), ( 'Wln.succin', ( 'Cam.coli', 'Cam.jejuni' ) ) ), ( 'Dsv.desulf', ( ( ( ( ( 'Dmn.tiedje', 'Dsm.acetox' ), ( 'Dss.variab', 'Dsb.postga' ) ), 'Bde.stolpi' ), 'Myx.xanthu' ), 'Bde.bacter' ) ) 'Delta Purple' ), ( 'Syn.6301', ( ( ( 'Lpt.buccal', 'Bac.termit' ), ( 'Fus.perfoe', ( ( 'Fus.gonido', ( 'Fus.mortif', 'Fus.varium' ) ), ( 'Fus.russi', ( 'Fus.simiae', 'Fus.nuclea' ) ) ) ) ) 'Fusobacteria', ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( ( 'Myb.paratu', 'Myb.avium4' ), 'Myb.avium1' ), 'Myb.3937' ), 'Myb.kansas' ), ( 'Myb.bovis', 'Myb.tuberc' ) ), ( 'Myb.gordon', 'Myb.asiati' ) ), ( 'Myb.nonchr', 'Myb.terrae' ) ), 'Myb.trivia' ), ( ( ( ( 'Myb.phlei', 'Myb.flaves' ), ( 'Myb.chromo', 'Myb.thermo' ) ), 'Myb.fallax' ), ( 'Myb.senega', 'Myb.neoaur' ) ) ), 'Myb.chelon' ), 'Myb.aurum' ), ( ( 'Noc.otitid', 'Rco.equi' ), 'Tsu.paurom' ) ), ( ( 'Scp.hirsut', 'Fae.rectiv' ), 'Psc.thermo' ) ), ( 'Cor.xerosi', ( 'Cor.polymo', 'Cor.renale' ) ) ), ( 'Fra.sp.L27', ( ( ( 'Stm.coelic', 'Stm.lividu' ), 'Stm.ambofa' ), ( 'Der.congol', ( 'Rot.dentoc', ( 'Mic.luteus', 'Arb.globif' ) ) ) ) ) ), ( 'Arb.simple', 'Armb.eryth' ) ), ( ( ( 'Fus.prausn', 'Prp.acnes' ), 'Myb.chitae' ), ( 'Prp.freude', ( 'Prp.acidip', ( 'Prp.thoeni', 'Prp.jensen' ) ) ) ) ), ( 'Gar.vagina', ( ( 'Bif.minimm', ( 'Bif.astero', 'Bif.coryne' ) ), ( ( 'Bif.magnum', ( 'Bif.globos', 'Bif.cunnic' ) ), ( 'Bif.bifidu', ( ( ( 'Bif.adoles', 'Bif.dentim' ), 'Bif.catenu' ), ( 'Bif.breve', ( ( 'Bif.infans', 'Bif.indicm' ), ( 'Bif.pseudo', ( 'Bif.longum', 'Bif.suis' ) ) ) ) ) ) ) ) ) ), 'L.minutus' ) 'High G+C Gram Positive', ( ( ( ( ( ( 'Eub.limosu', 'C.barkeri' ), ( ( ( 'C.purinoly', 'C.acidiuri' ), ( ( 'Acm.rumini', ( 'C.aminoval', ( ( 'C.symbiosm', 'C.oroticum' ), ( 'C.clostrid', ( 'C.coccoids', 'Stc.hansen' ) ) ) ) ), ( 'C.sticklan', ( 'C.mangenot', ( ( 'C.sordelli', 'Eub.tenue' ), 'C.litusebu' ) ) ) ) ), ( ( ( ( 'C.cadavers', 'C.fallax' ), ( ( 'C.paraperf', 'C.carnis' ), 'C.butyricm' ) ), 'C.perfring' ), ( ( 'C.histolyt', 'C.limosum' ), ( ( 'C.scatolog', ( 'C.pasteuri', ( 'C.kluyveri', ( 'C.ljungdah', 'C.tyrobuty' ) ) ) ), ( ( 'C.subtermi', 'C.botul.G' ), ( ( 'C.cochlear', 'C.malenomi' ), ( 'C.oceanicm', ( 'C.sporogen', 'C.novyi' ) ) ) ) ) ) ) 'Johnson Group 1' ) ), ( 'C.sporosph', 'C.leptum' ) ), ( ( 'Sns.bryant', 'Snt.wolfei' ), ( 'C.thmsacch', 'C.thmaceti' ) ) ), ( ( 'Han.praeve', 'Shb.lortet' ), ( 'Hel.chlorm', ( ( 'Spm.pauciv', 'C.quercico' ), 'Meg.elsden' ) ) ) ), ( ( ( ( ( ( ( ( ( ( 'M.hominis', ( ( 'M.arginini', 'M.arthriti' ), ( 'M.salivari', 'M.orale' ) ) ), ( 'M.pulmonis', ( 'M.lipophil', ( 'M.agalacti', ( 'M.fermenta', ( 'M.californ', 'M.bovigeni' ) ) ) ) ) ), ( ( 'M.mobile', 'M.sualvi' ), ( 'M.neurolyt', ( 'M.hyorhini', 'M.hyopneum' ) ) ) ), ( ( 'M.pneumoni', ( 'M.pirum', 'M.gallisep' ) ), ( ( 'M.muris', 'M.iowae' ), 'Upl.urealy' ) ) ), ( ( ( ( ( ( ( ( 'M.capricol', 'M.PG50' ), 'M.mycoides' ), 'M.putrefac' ), ( 'M.ellychni', ( 'M.sp.M1', 'Acp.entomo' ) ) ), 'M.sp.831C4' ), ( ( 'Spp.sp.MQ1', 'Spp.sp.DU1' ), ( 'Spp.sp.TG1', ( 'Spp.apis', ( 'Spp.sp.CN5', 'Spp.taiwan' ) ) ) ) ), ( 'Spp.mirum', ( 'Spp.sp.DW1', 'Spp.citri' ) ) ), 'Spp.sp.Y32' ) ), ( ( ( 'Acp.laidla', 'M.mlo.onth' ), 'Acp.modicu' ), ( 'Anp.abacto', ( 'Anp.bactoc', 'Anp.varium' ) ) ) ), 'Ast.anaero' ), ( ( 'C.ramosum', ( 'L.catenafo', 'L.vitulinu' ) ), 'Ers.rhusio' ) ), ( 'C.innocuum', ( 'Stc.pleomo', 'Eub.biform' ) ) ) 'Mycoplasmas and relatives', ( 'Gem.haemol', ( ( ( ( ( ( ( ( ( 'B.subtilis', 'L.thermoph' ), 'Spl.inulin' ), ( 'Bro.thermo', 'Lis.monocy' ) ), 'Kur.zopfii' ), ( 'Eco.faecal', 'Vag.fluvia' ) ), ( 'Crn.diverg', ( 'L.maltarom', 'Crn.piscic' ) ) ), 'Aer.virida' ), ( ( ( ( ( ( ( ( 'L.casei', 'L.cas.rham' ), 'L.sake' ), ( 'L.bifermen', 'L.corynifo' ) ), ( 'L.sharpeae', ( 'Ped.acidil', 'Ped.pentos' ) ) ), ( ( 'L.plantarm', ( 'L.farcimin', 'L.alimenta' ) ), ( 'L.brevis', ( ( 'L.fructivo', 'L.sanfranc' ), ( 'L.buchneri', ( 'L.vermifor', 'L.hilgardi' ) ) ) ) ) ), ( 'L.mali', ( ( 'L.murinus', 'L.animalis' ), ( ( 'L.ruminis', 'L.agilis' ), ( 'L.salivari', 'L.aviarius' ) ) ) ) ), ( ( ( ( ( 'L.delbruck', 'L.lactis' ), ( 'L.acetoler', ( 'L.acidophi', 'L.amyvorus' ) ) ), 'L.gasseri' ), 'L.amyphilu' ), 'L.fermentm' ) ), ( ( ( ( ( 'L.viridesc', 'L.minor' ), 'L.halotole' ), ( 'Lc.prmesen', 'L.confusus' ) ), 'L.kandleri' ), ( 'Lc.oenos', ( 'Lc.lactis', ( 'Lc.mesente', 'Lc.cremori' ) ) ) ) ) ), ( ( ( 'Stc.bovis', 'Stc.saliva' ), ( 'Lcc.planta', 'Lcc.raffin' ) ), ( ( 'Lcc.cremor', 'Lcc.lactis' ), 'Lcc.garvie' ) ) ) ) 'Lactobacillus/Bacillus' ) ) 'Low G+C Gram Positive' ) 'Gram Positive' ) ) ) ) ) ) ) 'Bacteria' ) ;