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2.10. Nucleotide symbol comparison table for BESTFIT

Symbol 3-letter Meaning Codons ! IUPAC ..

A Ala Alanine GCT GCC GCA GCG ! GCX

B (D/N) Asx Aspartic,

Asparagine ! RAY

C Cys Cysteine TGT TGC ! TGY

D Asp Aspartic GAT GAC ! GAY

E Glu Glutamic GAA GAG ! GAR

F Phe Phenylalanine TTT TTC ! TTY

G Gly Glycine GGT GGC GGA GGG ! GGX

H His Histidine CAT CAC ! CAY

I Ile Isoleucine ATT ATC ATA ! ATH

J ??? No meaning ... ! ...

K Lys Lysine AAA AAG ! AAR

L Leu Leucine TTG TTA CTT CTC CTA CTG ! TTR CTX YTR; YTX

M Met Methionine atg ! ATG

N Asn Asparagine AAT AAC ! AAY

O ??? No meaning ... ! ...

P Pro Proline CCT CCC CCA CCG ! CCX

Q Gln Glutamine CAA CAG ! CAR

R Arg Arginine CGT CGC CGA CGG AGA AGG ! CGX AGR MGR; MGX

S Ser Serine TCT TCC TCA TCG AGT AGC ! TCX AGY; WSX

T Thr Threonine ACT ACC ACA ACG ! ACX

U ??? No meaning ... ! ...

V Val Valine GTT GTC GTA GTG ! GTX

W Trp Tryptophan TGG ! TGG

X Xxx Unknown ! XXX

Y Tyr Tyrosine TAT TAC ! TAY

Z (E/Q) Glx Glutamic,

Glutamine ! SAR

* End Terminator TAA TAG TGA ! TAR TRA; TRR


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