RL;HSPDGFAR - X03795 Human mRNA for platelet derived growth factor A-chain
ID HSPDGFAR standard; RNA; PRI; 1308 BP.
XX
AC X03795;
TO: embl:* Sequences: 146,576 Symbols: 158,171,400 Word Size: 6
Score Init1 Initn
< 4 371 371:==================================================
8 26 26:=============
12 31 31:================
16 14 14:=======
20 39 39:====================
24 2752 2752:==================================================
28 13043 13043:==================================================
32 41933 41933:==================================================
36 60505 60505:==================================================
40 52067 52067:==================================================
44 37179 37179:==================================================
48 31566 31566:==================================================
52 22961 22961:==================================================
56 13838 13838:==================================================
60 8027 8027:==================================================
64 4068 4014:==================================================
68 2060 2002:==================================================
72 1104 1056:==================================================
76 734 690:==================================================
80 393 377:==================================================
84 195 180:==================================================
88 107 103:==================================================
92 51 48:========================--
96 19 19:==========
100 10 10:=====
104 7 34:====+++++++++++++
108 5 55:===+++++++++++++++++++++++++
112 1 45:=++++++++++++++++++++++
116 1 46:=++++++++++++++++++++++
120 0 28:++++++++++++++
124 0 16:++++++++
128 1 7:=+++
132 0 7:++++
136 0 5:+++
140 0 1:+
144 0 0:
148 0 0:
152 0 3:++
156 0 2:+
160 0 4:++
>160 44 48:======================++
mean initn score: 37.1 (5.16)
mean init1 score: 37.1 (5.16)
The best scores are: init1 initn opt..
Em_Pr:Hspdgfar X03795 Human mRNA for platelet derived gr..5232 5232 5232
Em_Pr:Hspdgfa X06374 Human mRNA for platelet-derived gro..3155 3799 3766
Em_Pr:A09204 A09204 H.sapiens mRNA for platelet-derived ..2457 2501 2457
Em_Ro:Rnprgf L06238 Rat platelet-derived growth factor A..2013 2430 2046
Em_Ro:Rnpdgfax L06894 Rattus norvegicus (clones PTZ 18r ..1912 2392 1995
Em_Ro:Mmpdgfa M29464 Mouse platelet-derived growth facto..1963 2381 1987
Em_Ro:Rspdgfa D10106 Rat mRNA for platelet-derived growt..1567 2045 1926
Em_Ro:Rnpdgfacp Z14120 R.norvegicus mRNA for platelet-de..1847 1847 1847
Em_Pr:Hspdgfab M83575 Human platelet-derived growth fact..1020 1520 1034
Em_Vr:Xlpdgfa M23237 X.laevis platelet-derived growth fa.. 575 1430 1278
Em_Vr:Xlpdgfaa M23238 X.laevis platelet-derived growth f.. 575 1318 1274
Em_Pr:Hspdga1 M20488 Human platelet-derived growth facto..1133 1181 1757
Em_Pr:Hspdgfa1 M21571 Human platelet-derived growth fact.. 640 1076 1714
Em_Vr:Xlpdgfac X17545 Xenopus mRNA for platelet-derived .. 575 1075 1413
Em_Un:S51624 S51624 platelet-derived growth factor A-cha.. 649 1031 1651
Em_Pr:Hspdgfa7 M19989 Human platelet-derived growth fact..1020 1020 1034
Em_Pr:Hspgdf M59423 Human platelet-derived growth factor.. 945 945 1477
Em_Un:S50869 S50869 platelet-derived growth factor A-cha.. 472 852 1059
Em_Pr:Hspdga7 M20494 Human platelet-derived growth facto.. 408 788 1002
Em_Pr:Hspdgfa4 M19986 Human platelet-derived growth fact.. 768 768 768
Em_Pr:Hspdga4 M20491 Human platelet-derived growth facto.. 768 768 769
Em_Pr:Hspdga5 M20492 Human platelet-derived growth facto.. 520 520 520
Em_Pr:Hspdgfa5 M19987 Human platelet-derived growth fact.. 520 520 520
Em_Ma:Fssismsg X05112 Feline mRNA for c-sis proto-oncoge.. 343 459 546
Em_Vi:Ressv1 V01201 Simian sarcoma virus proviral sequen.. 381 450 533
Em_Pr:Hssispdg M12783 Human c-sis/platelet-derived growt.. 374 436 560
Em_Pr:Hspdgfba M16288 Human platelet-derived growth fact.. 374 436 560
Em_Pr:Hspdgfa3 M19985 Human platelet-derived growth fact.. 421 421 436
Em_Pr:Hspdga2 M20489 Human platelet-derived growth facto.. 400 400 401
Em_Pr:Hspdgfa2 M19984 Human platelet-derived growth fact.. 400 400 403
Em_Pr:Hspdga3 M20490 Human platelet-derived growth facto.. 393 393 408
Em_Pr:Hspdgfb1 X03702 Human osteosarcoma cell line U-2 O.. 374 374 481
Em_Pr:Hscsist X02744 Human mRNA for c-sis gene (clone pS.. 374 374 552
Em_Pr:Hspdgfb X02811 Human mRNA for platelet-derived gro.. 374 374 558
Em_Ro:Rnpdgfbcp Z14117 R.norvegicus mRNA for platelet-de.. 289 289 514
Em_Pr:Hssisb3 X00560 Human proto-oncogene c-sis fragment.. 285 285 334
Em_Pr:Hssisa4 K01399 Human c-sis proto-oncogene for plat.. 285 285 334
Em_Ma:Fssisg4 X06300 Feline c-sis proto-oncogene exon 4 .. 285 285 354
Em_Pr:Hspdgfa6 M19988 Human platelet-derived growth fact.. 280 280 288
Em_Pr:Hspdga6 M20493 Human platelet-derived growth facto.. 280 280 288
Em_Pr:Hssis3 K01915 Human platelet-derived growth factor.. 278 278 313
Em_Ro:Mmcsis04 M64847 Mouse platelet-derived growth fact.. 247 247 330
Em_Ro:Mmsis04 M84451 Mus musculus platelet-derived growt.. 247 247 330
Em_Ro:S64556 S64556 platelet-derived growth factor A-cha.. 234 234 237
Em_Vi:Ebv V01555 Epstein-Barr virus (EBV) genome. The co.. 74 173 91
Em_Vi:Hehs4b958 M80517 Epstein-Barr virus, artifactual j.. 74 173 91
Em_Fu:Scchriii /rev X59720 S.cerevisiae chromosome III c.. 85 172 90
Em_Vi:Hehsv1g3 X06461 Herpes simplex virus type I immedi.. 73 167 146
Em_Vi:Hehs4b958 /rev M80517 Epstein-Barr virus, artifact.. 71 159 112
Em_Vi:Ebv /rev V01555 Epstein-Barr virus (EBV) genome. T.. 71 159 112
Em_Vi:He1cg /rev X14112 Herpes simplex virus (HSV) type .. 73 158 146
Em_Pr:Hsretblas /rev L11910 Human retinoblastoma suspect.. 77 157 98
Em_Ma:Bttyrhaa M36705 Bovine tyrosine hydroxylase mRNA, .. 84 153 120
Em_Pr:Hsrgrsal /rev M25718 Human rDNA and 4 Alu repeats 108 153 108
Em_Pr:Hsbn51pro /rev L15301 Promoter region of gene enco.. 65 151 65
Em_Ro:Rnvaoxy /rev X59496 Rat genes for vasopressin, oxy.. 66 150 66
Em_Ro:Rnvaox /rev M67442 Rat vasopressin and oxytocin ge.. 66 150 66
Em_Pr:Hsretblas L11910 Human retinoblastoma suspectibili.. 84 137 94
Em_Ba:Shhydroxy /rev L05390 Streptomyces halstedii hydro.. 83 136 124
Em_Vi:Pxorfprt /rev M30023 Orf virus homologue of retrov.. 85 136 145
Em_In:Tc1603 /rev X70949 T.cruzi FL-160-3 gene, partial 81 135 83
Em_Pr:Hsghcsa J03071 Human growth hormone (GH-1 and GH-2.. 83 134 92
Em_Pr:Hspsag X14810 Human DNA for prostate specific anti.. 83 133 105
Em_Vi:Hehs1bamf M90438 Herpes simplex virus type 1 BamHI.. 86 132 124
Em_Ro:Clpa1v M76730 Chinese hamster pro-alpha-1 (V) coll.. 84 132 110
Em_Pr:Hstpa /rev K03021 Human tissue plasminogen activat.. 89 131 94
Em_Vi:Hehsecomg M86664 Equine herpesvirus 1 complete genome 79 130 134
Em_Pl:Mcppca /rev X14587 Mesembryanthemum crystallinum p.. 84 130 103
Em_Ro:Mmbcl2 M16506 Mouse bcl-2 gene encoding mbcl-2-alp.. 82 129 115
Em_Pr:Hsut949 L18479 Human chromosome 16 STS UT949 88 129 89
Em_Ro:Rncmg1 X52590 Rat cMG1 mRNA 80 127 80
Em_Pr:Hspppa M11726 Human pancreatic polypeptide gene, c.. 79 126 79
Em_Pr:Hshbb2 J00179 Human beta globin region on chromoso.. 77 126 88
Em_Pr:Hspdgfbb X63966 H.sapiens synthetic gene for plate.. 125 125 350
Em_Pr:Hsthysyn X67098 H.sapiens rTS mRNA containing four.. 83 125 85
Em_Vi:Hehsecomg /rev M86664 Equine herpesvirus 1 complet.. 79 125 134
Em_Ro:Mmpcd M97957 Mouse pyruvate carboxylase homologous.. 75 125 78
Em_Vr:Gglputrx /rev M77688 Chicken link protein gene, 5'.. 73 124 81
Em_Pr:Hspsaa M27274 Human prostate specific antigen gene.. 83 124 105
Em_Pr:Hsggf2a /rev L12260 Human recombinant glial growth.. 82 124 99
Em_In:Acmyshc M60954 Acanthamoeba castellanii myosin hea.. 80 124 80
Em_In:Dmsgg3 X70862 D.melanogaster mRNA for sgg protein .. 80 124 83
Em_Pl:Tae1b M90664 Wheat ubiquitin activating enzyme (E1.. 79 123 156
Em_Ro:Rnmt12c /rev M11794 Rat metallothionein-2 and meta.. 75 123 77
Em_Pr:Hsbat2 Z15025 H.sapiens Bat2 gene 76 123 86
Em_In:Msatprna X64233 M.sexta mRNA for vacuolar ATPase s.. 75 122 79
Em_Fu:Scpet3 /rev M17143 Yeast (S.cerevisiae) PETIII gen.. 80 122 86
Em_Pr:Hsinos L08488 Human inositol polyphosphate 1-phosp.. 74 122 84
Em_Vr:Gghsf3a L06098 Chicken mRNA sequence 75 122 79
Em_Pr:Hshprt8a /rev M26434 Human hypoxanthine phosphorib.. 73 121 82
Em_Ro:Mmglur /rev X66367 M.musculus gene for glucocortic.. 78 121 78
Em_Pr:Hscol18ax L22548 Human collagen type XVIII alpha (.. 77 121 105
Em_Pr:Hscavii5 M76423 H.sapiens carbonic anhydrase VII (.. 75 121 99
Em_Fu:Ppactard /rev M15272 Slime mold (P.polycephalum) a.. 83 120 86
Em_Pr:Hskal L10038 Homo sapiens pre-pro-protein for kall.. 72 120 80
Em_Ro:Mmbgcxd X14061 Mouse beta-globin complex DNA for y.. 77 120 79
Em_Ro:Cgdhfrori /rev X52034 C. griseus dhfr origin of re.. 75 120 80
Em_Ro:Rnaldred /rev M60322 Rat aldose reductase gene, co.. 71 120 79
Em_Ba:Acnifreg /rev M60090 Azotobacter chroococcum nifU,.. 77 120 103
Em_Ro:Mmatp4b3 M64687 Mouse gastric (H+,K+)-ATPase beta .. 77 120 86
Platelet.Seq
Em_Pr:Hspdgfar
ID HSPDGFAR standard; RNA; PRI; 1308 BP.
AC X03795;
DT 18-NOV-1986 (Rel. 10, Created)
DT 12-SEP-1993 (Rel. 36, Last updated, Version 2)
DE Human mRNA for platelet derived growth factor A-chain (PDGF-A)
KW glycoprotein; platelet-derived growth factor 1; signal peptide. . . .
SCORES Init1: 5232 Initn: 5232 Opt: 5232
100.0% identity in 1308 bp overlap
10 20 30 40 50 60
Platel TCCGCAAATATGCAGAATTACCGGCCGGGTCGCTCCTGAAGCCAGCGCGGGGAGGCAGCG
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Hspdgf TCCGCAAATATGCAGAATTACCGGCCGGGTCGCTCCTGAAGCCAGCGCGGGGAGGCAGCG
10 20 30 40 50 60
{ Output omitted }
1270 1280 1290 1300
Platel GCTTCCTTGTCAAAAAGAGAGAGAGAGAAAAGAAAAAAAAAGGAATTC
||||||||||||||||||||||||||||||||||||||||||||||||
Hspdgf GCTTCCTTGTCAAAAAGAGAGAGAGAGAAAAGAAAAAAAAAGGAATTC
1270 1280 1290 1300
{ Output omitted }
Platelet.Seq
Em_Vi:Ressv1
ID RESSV1 standard; DNA; VRL; 5779 BP.
AC V01201; J02394; J02396; J02397;
DT 13-JUL-1983 (Rel. 03, Created)
DT 12-SEP-1993 (Rel. 36, Last updated, Version 4)
DE Simian sarcoma virus proviral sequence with genes coding for
DE envelope protein (env) and polymerase (pol). . . .
SCORES Init1: 381 Initn: 450 Opt: 533
61.4% identity in 508 bp overlap
{ Output omitted }
700 710 720 730 740 750
Platel TTTACGAGATTCCTCGGAGTCAGGTCGACCCCACGTCCGCCAACTTCCTGATCTGGCCCC
| | |||||| | ||| | | |||||| ||| |||||||||||| | ||||| |
Ressv1 TGTTCGAGATCTCCCGGCGCCTCATCGACCGCACCAATGCCAACTTCCTGGTGTGGCCGC
4060 4070 4080 4090 4100 4110
760 770 780 790 800 810
Platel CGTGCGTGGAGGTGAAACGCTGCACCGGCTGCTGCAACACGAGCAGTGTCAAGTGCCAGC
| |||||||||||| | |||||| ||||||| ||||||| ||| || |||||| ||
Ressv1 CCTGCGTGGAGGTGCAGCGCTGCTCCGGCTGTTGCAACAACCGCAACGTGCAGTGCCGGC
4120 4130 4140 4150 4160 4170
{ Output omitted }
CPU time: 0:45:29
Output File: Platelet6.Fasta_Embl37