21-Jul-89 22:15:51-GMT,243600;000000000001 Received: from cunyvm.cuny.edu by net.bio.net (5.61/1.15) with SMTP id AA11464; Fri, 21 Jul 89 15:13:28 -0700 Message-Id: <8907212213.AA11464@net.bio.net> Received: from EMBL.BITNET by CUNYVM.CUNY.EDU (IBM VM SMTP R1.1) with BSMTP id 1403; Fri, 21 Jul 89 18:14:15 EDT Date: Sat, 22 Jul 89 00:00:48 To: syeh From: EMBL Network File Server Reply-To: General PostMaster Organisation: European Molecular Biology Laboratory Postal-Address: Meyerhofstrasse 1, 6900 Heidelberg, W. Germany Subject: Automatic response to : GET REFLIST:SEQ_ANALYSIS.DAT CC --------------------------------------------------------------------- CC CC ************** CC * SEQANALREF * CC ************** CC CC SEQUENCE ANALYSIS BIBLIOGRAPHIC REFERENCE DATA BANK CC Release: 9.00 / July 15, 1989 CC CC Compiled by: Amos Bairoch CC Department of Medical Biochemistry CC C.M.U. CC University of Geneva CC Switzerland CC CC EARN/BITNET: bairoch@cgecmu51 CC Arpanet : bairoch@bionet-20.bio.net CC CC --------------------------------------------------------------------- CC ID AAR8201 RA Aaronson R.P., Young J.F., Palese P.; RT "Oligonucleotide mapping: evaluation of its sensitivity by computer- RT simulation."; RL Nucleic Acids Res. 10:237-246(1982). KW NUCLEIC ACID. // ID ABR8801 RA Abagyan R.A., Maiorov V.N.; RT "A simple qualitative representation of polypeptide chain folds: RT comparison of protein tertiary structures."; RL J. Biomol. Struct. Dyn. 5:1267-1279(1988). KW PROTEIN; 3D STRUCTURE; REPRESENTATION. // ID ABR8802 RA Abagyan R.A., Maiorov V.N.; RT "Efficient method for computer-aided search for conformational RT similarities in data base of protein three-dimensional structures."; RL (In) Abstracts of: Application of data bases and microcomputers in RL molecular biology, pp.53-53, Jena (1988). KW PROTEIN; TERTIARY STRUCTURE. // ID ABR8401 RA Abarbanel R.M., Wieneke P.R., Mansfield E., Jaffe D.A., Brutlag D.L.; RT "Rapid searches for complex patterns in biological molecules."; RL Nucleic Acids Res. 12:263-280(1984). KW PATTERN. // ID ABE8701 RA Abola E.E., Bernstein F.C., Bryant S.H., Koetzle T.F., Weng J.; RT "Protein data bank."; RL (In) Crystallographic databases, Data Commission of the International RL Union of Crystallography, Bonn/Cambridge/Chester, (1987). KW PROTEIN; DATA BANK; 3D STRUCTURE. // ID ABE8501 RA Abola E.E., Bernstein F.C., Koetzle T.F.; RT "The protein data bank."; RL (In) The role of data in scientific progress, Glaeser P.S., Ed., RL pp139-144, Elsevier, North Holland, (1985). KW PROTEIN; DATA BANK; 3D STRUCTURE. // ID ABD8701 RA Abraham D.J., Leo A.J.; RT "Extension of the fragment method to calculate amino acid zwitterion RT and side chain partition coefficients."; RL Proteins: Structure, Function and Genetics 2:130-152(1987). KW PROTEIN; HYDROPHOBICITY; SCALE. // ID ABK8601 RA Abremski K., Ward D.F.; RT "PLASMID MAP: a microcomputer program for display and storage of plasmid RT data."; RL Gene 46:127-130(1986). KW NUCLEIC ACID; RESTRICTION MAP; PLASMID; PASCAL; IBM PC. // ID ADJ8201 RA Adams J., Rothman E.D.; RT "Estimations of phylogenetic relationships from DNA restriction RT patterns and selection of endonuclease cleavage sites."; RL Proc. Natl. Acad. Sci. USA 79:3560-3564(1982). KW PHYLOGENY. // ID ADT8601 RA Adrian T., Heinrich W.; RT "COMAP: a comigrating analysis program for estimating the relationship RT of adenoviruses on the genome level."; RL Nucleic Acids Res. 14:559-565(1986). KW NUCLEIC ACID. // ID ADA8801 RA Adzhubei A.A., Eisenmenger F., Tumanyan V.G., Brodzinski S., Esipova N.G.; RT "Classification of protein secondary structure types on the basis of RT protein data bank."; RL (In) Abstracts of: Application of data bases and microcomputers in RL molecular biology, pp.51-51, Jena (1988). KW PROTEIN; SECONDARY STRUCTURE. // ID AHK8701 RA Ahern K.; RT "GENEius: powerful RNA structure analysis in an evolving package."; RL Biotechnology Software 11:15-19(1987). KW NUCLEIC ACID; SOFTWARE PACKAGE; APPLE II. // ID AKN8801 RA Akimova N.I., Alexandrov A.A., Nitsai O.V., Palmbakh G.G., Sedov A.E., RA Vitzon L.A., Zhangheldina G.T., Golovanov E.I., Sprizhitsky Y.A., RA Shepelev V.A.; RT "GENEXPESS, database of primary biopolymer structures."; RL (In) Abstracts of: Application of data bases and microcomputers in RL molecular biology, pp.18-18, Jena (1988). KW NUCLEIC ACID; PROTEIN; DATA BANK. // ID ALA8801 RA Alexandrov A.A.; RT "The development of databases for biopolymer structures and working RT procedures in 1985-1988: major results and trends."; RL (In) Abstracts of: Application of data bases and microcomputers in RL molecular biology, pp.14-15, Jena (1988). KW NUCLEIC ACID; PROTEIN; DATA BANK. // ID ALL8801 RA Allison L., Yee C.N.; RT "Restriction mapping is in separation theory."; RL CABIOS 4:97-101(1988). KW NUCLEIC ACID; RESTRICTION MAP. // ID ALH8301 RA Almagor H.; RT "A Markov analysis of DNA sequences."; RL J. Theor. Biol. 104:633-6xx(1983). KW NUCLEIC ACID. // ID ALR8601 RA Altman R.B., Jardetzky O.; RT "New strategies for the determination of macromolecular structure in RT solution."; RL J. Biochem. 100:1403-1423(1986). // ID ALS8902 RA Altschul S.F., Carroll R.J., Lipman D.J.; RT "Weights for data related by a tree."; RL J. Mol. Biol. 207:647-653(1989). KW PHYLOGENY; MULTIPLE ALIGNMENT. // ID ALS8501 RA Altschul S.F., Erickson B.W.; RT "Recognition of good alignments of segments from two DNA or RNA."; RL Fed. Proc. 44:1086-1086(1985). KW NUCLEIC ACID; ALIGNMENT. // ID ALS8502 RA Altschul S.F., Erickson B.W.; RT "Significance for nucleotide sequence alignments: a method for random RT sequence permutation that preserves dinucleotide and codon usage."; RL Mol. Biol. Evol. 2:526-538(1985). KW NUCLEIC ACID; ALIGNMENT. // ID ALS8601 RA Altschul S.F., Erickson B.W.; RT "Optimal sequence alignment using affine gap costs."; RL Bull. Math. Biol. 48:603-616(1986). KW ALIGNMENT. // ID ALS8602 RA Altschul S.F., Erickson B.W.; RT "A nonlinear measure of subalignment similarity and its significance RT levels."; RL Bull. Math. Biol. 48:617-632(1986). KW ALIGNMENT. // ID ALS8603 RA Altschul S.F., Erickson B.W.; RT "Locally optimal subalignments using nonlinear similarity functions."; RL Bull. Math. Biol. 48:633-660(1986). KW ALIGNMENT. // ID ALS8801 RA Altschul S.F., Erickson B.W.; RT "Significance levels for biological sequence comparison using non-linear RT similarity functions."; RL Bull. Math. Biol. 50:77-92(1988). KW ALIGNMENT. // ID ALS8901 RA Altschul S.F., Lipman D.J.; RT "Tree, stars, and multiple biological sequence alignment."; RL SIAM J. Appl. Math. 49:197-209(1989). KW PHYLOGENY; MULTIPLE ALIGNMENT. // ID ANC7301 RA Anfinsen C.B.; RT "Principles that govern the folding of protein chains."; RL Science 181:223-230(1973). KW PROTEIN; 3D STRUCTURE; THEORY. // ID ANC7501 RA Anfinsen C.B., Scheraga H.A.; RT "Experimental and theoretical aspects of protein folding."; RL Adv. Prot. Chem. 29:205-300(1975). KW PROTEIN; 3D STRUCTURE; THEORY. // ID ARR8401 RA Arentzen R., Ripka W.C.; RT "Introduction of restriction enzyme sites in protein-coding DNA RT sequences by site-specific mutagenesis not affecting the amino acid RT sequence: a computer program."; RL Nucleic Acids Res. 12:777-787(1984). KW NUCLEIC ACID; PROTEIN; RESTRICTION SITE. // ID ARP8701 RA Argos P.; RT "A sensitive procedure to compare amino acid sequences."; RL J. Mol. Biol. 193:385-396(1987). KW PROTEIN; ALIGNMENT. // ID ARP8702 RA Argos P.; RT "Analysis of sequence-similar pentapeptides in unrelated protein RT tertiary structures: strategies for protein folding and a guide for RT site-directed mutagenesis."; RL J. Mol. Biol. 197:331-348(1987). KW PROTEIN; 3D STRUCTURE; PREDICTION. // ID ARP7801 RA Argos P., Hanei M., Garavito R.M.; RT "The Chou-Fasman secondary structure prediction method with an extended RT data base."; RL FEBS Letters 93:19-24(1978). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID ARP8301 RA Argos P., Hanei M., Wilson J.M., Kelley W.N.; RT "A possible nucleotide-binding domain in the tertiary fold of RT phosphoribosyltransferases."; RL J. Biol. Chem. 258:6450-6457(1983). KW PROTEIN. // ID ARP8801 RA Argos P., McCaldon P.; RT "Theoretical and computer analysis of protein primary sequences: structure RT comparison and prediction."; RL (In) Genetic Engineering, Principle and Methods, Setlow J.K., Ed., RL 10:21-66, Plenum Press, New-York (1988). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION; REVIEW. // ID ARP8201 RA Argos P., Palau J.; RT "Amino acid distribution in protein secondary structures."; RL Int. J. Pept. Prot. Res. 19:380-393(1982). KW PROTEIN; SECONDARY STRUCTURE. // ID ARP8601 RA Argos P., Rao J.K.M.; RT "Prediction of protein structure."; RL Methods in Enzymology 130:185-207(1986). KW PROTEIN; SECONDARY STRUCTURE; 3D STRUCTURE; PREDICTION; REVIEW. // ID ARP8202 RA Argos P., Rao J.K.M., Hargrave P.A.; RT "Structural prediction of membrane-bound proteins."; RL Eur. J. Biochem. 128:565-575(1982). KW PROTEIN. // ID ARP7901 RA Argos P., Rossman M.G., Grau U.M., Zuber H., Frank G., Tratschin J.D.; RT "Thermal stability and protein structure."; RL Biochemistry 18:5698-5703(1979). KW PROTEIN. // ID ARP7601 RA Argos P., Schwarz J., Schwarz J.; RT "An assessment of protein secondary structure prediction methods based RT on amino acid sequences."; RL Biochim. Biophys. Acta 439:261-273(1976). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID ARP8302 RA Argos P., Siezen R.J.; RT "Structural homology of lens crystallins. A method to detect protein RT structural homology from primary sequences."; RL Eur. J. Biochem. 131:143-148(1983). KW PROTEIN. // ID ARJ8601 RA Arnold J., Eckenrode V.K., Lemke K., Phillips G.J., Schaeffer S.W.; RT "A comprehensive package for DNA sequence analysis in FORTRAN IV for RT the PDP-11."; RL Nucleic Acids Res. 14:239-254(1986). KW NUCLEIC ACID; SOFTWARE PACKAGE; VOICE ENTRY; FORTRAN. // ID ATT8601 RA Atilgan T., Nicholas H.B. Jr., McClain W.H.; RT "A statistical method for correlating tRNA sequence with amino acid RT specificity."; RL Nucleic Acids Res. 14:375-380(1986). KW NUCLEIC ACID; TRNA; STATISTIC. // ID ATM8801 RA Attimonelli M., Lanave C., Liuni S., Pesole G.; RT "MERGE: a software package for generating a single data-base starting RT from EMBL and GenBank collections."; RL Nucleic Acids Res. 16:1681-1682(1988). KW NUCLEIC ACID; DATA BANK. // ID AUJ8601 RA Augen J., Wold F.; RT "How much sequence information is needed for the regulation of amino- RT terminal acetylation of eukaryotic proteins."; RL Trends in Biochem. Sci. 11:494-497(1986). KW PROTEIN. // ID AUI8901 RA Auger I.E., Lawrence C.E.; RT "Algorithms for the optimal identification of segment neighborhoods."; RL Bull. Math. Biol. 51:39-54(1989). KW PROTEIN; ALGORITHM. // ID AUP8201 RA Auron P.E., Rindone W.P., Vary C.P.H., Celentano J.J., Vournakis J.N.; RT "Computer-aided prediction of RNA secondary structures."; RL Nucleic Acids Res. 10:403-419(1982). KW NUCLEIC ACID; RNA; SECONDARY STRUCTURE; PREDICTION. // ID BAV8801 RA Babenko V.E., Sagitov V.R.; RT "The vectors data base."; RL (In) Abstracts of: Application of data bases and microcomputers in RL molecular biology, pp.26-26, Jena (1988). KW NUCLEIC ACID; DATA BANK. // ID BAR8201 RA Bach R., Friedland P., Brutlag D.L., Kedes L.H.; RT "MAXAMIZE: A DNA sequencing strategy advisor."; RL Nucleic Acids Res. 10:295-304(1982). KW NUCLEIC ACID; EXPERT SYSTEM. // ID BAR8401 RA Bach R., Iwasaki Y., Friedland P.; RT "Intelligent computational assistance for experiment design."; RL Nucleic Acids Res. 12:11-29(1984). KW EXPERT SYSTEM. // ID BAA8601 RA Bachmair A., Finley D., Varshavsky A.; RT "In vivo half-life of a protein is a function of its amino-terminal RT residue."; RL Science 234:179-186(1986). KW PROTEIN. // ID BAD8601 RA Bacon D.J., Anderson W.F.; RT "Multiple sequence alignment."; RL J. Mol. Biol. 191:153-161(1986). KW MULTIPLE ALIGNMENT. // ID BAW8601 RA Bains W.; RT "MULTAN: a program to align multiple DNA sequences."; RL Nucleic Acids Res. 14:159-177(1986). KW NUCLEIC ACID; MULTIPLE ALIGNMENT. // ID BAW8801 RA Bains W.; RT "AXE: a program for isolating short segments of long DNA sequences."; RL CABIOS 4:491-492(1988). KW NUCLEIC ACID. // ID BAW8901 RA Bains W.; RT "MULTAN (2), A multiple string alignment program for nucleic acids and RT proteins."; RL CABIOS 5:51-52(1989). KW NUCLEIC ACID; PROTEIN; MULTIPLE ALIGNMENT. // ID BAA8201 RA Bairoch A.; RT "Suggestion to research groups working on protein and peptide RT sequence."; RL Biochem. J. 203:527-528(1982). KW PROTEIN. // ID BAM8501 RA Barber M.J., Eichler D.C.; RT "Word-processing software as a useful tool for searching nucleotide RT sequences for restriction enzymes sites."; RL Biotechniques 3:272-274(1985). KW NUCLEIC ACID; RESTRICTION SITE; WORD PROCESSOR. // ID BAJ8801 RA Barciszewski J., Joachimiak A., Twardowski T.; RT "Transfer and ribosomal 5S ribonucleic acids data bases."; RL (In) Abstracts of: Application of data bases and microcomputers in RL molecular biology, pp.42-42, Jena (1988). KW NUCLEIC ACID; DATA BANK; RRNA. // ID BAC7201 RA Barker W.C., Dayhoff M.O.; RT "Detecting distant relationships: computer methods and results."; RL (In) Atlas of Protein Sequence and Structure, 5:101-110(1972), Nat. RL Biomed. Res. Found., Washington D.C. KW PROTEIN; REVIEW. // ID BAC8601 RA Barker W.C., Hunt L.T., George D.G.; RT "Research uses of protein sequence databases."; RL Protein, Nucleic Acid and Enzyme 29:163-176(1986). KW PROTEIN; DATA BANK. CC In Japanese. // ID BAC8801 RA Barker W.C., Hunt L.T., George D.G.; RT "Identifying domains in protein sequences."; RL Protein Seq. Data Anal. 1:363-373(1988). KW PROTEIN. // ID BAC8501 RA Barker W.C., Hunt L.T., George D.G., Orcutt B.C.; RT "A resource for protein identification."; RL (In) The role of data in scientific progress, Glaeser P.S., Ed., RL pp127-133, Elsevier, North Holland, (1985). KW PROTEIN; DATA BANK. // ID BAC8701 RA Barker W.C., Hunt L.T., Seibel-Ross E., Yeh L.-S., George D.G.; RT "Identifying protein domains using consensus sequences."; RL Fed. Proc. 46:2232-2232(1987). KW PROTEIN. // ID BAC8602 RA Barker W.C., Johnson G.C., Hunt L.T., George D.G.; RT "Similar domains in different proteins: detection and significance."; RL Protein, Nucleic Acid and Enzyme 29:54-68(1986). KW PROTEIN. CC In Japanese. // ID BAC7801 RA Barker W.C., Ketcham L.K., Dayhoff M.O.; RT "A comprehensive examination of protein sequences for evidence of RT internal gene duplication."; RL J. Mol. Evol. 10:265-281(1978). KW PROTEIN; INTERNAL DUPLICATION. // ID BAE8201 RA Barkowsky E.V.; RT "Prediction of the secondary structure of globular proteins by their RT amino acid sequence."; RL Acta Biol. Med. Ger. 41:751-758(1982). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID BAG8701 RA Barton G.J., Sternberg M.J.E.; RT "Evaluation and improvements in the automatic alignment of protein RT sequences."; RL Protein Engineering 1:89-94(1987). KW PROTEIN; ALIGNMENT. // ID BAF8301 RA Bastie-Sigeac F., Bellis M., Roizes G.; RT "A method for selecting the coding DNA for a protein of known RT sequence. II Use of obligatory restriction sites."; RL Biochimie 65:77-82(1983). KW NUCLEIC ACID; PROTEIN; RESTRICTION SITE; CODING SEQUENCE IDENTIFICATION. // ID BEJ8601 RA Beckmann J.S., Brendel V., Trifonov E.N.; RT "Intervening sequences exhibit distinct vocabulary."; RL J. Biomol. Struct. Dyn. 4:391-400(1986). KW NUCLEIC ACID; INTRON. // ID BEB8801 RA Bellon B.; RT "Construction of restriction maps."; RL CABIOS 4:111-116(1988). KW NUCLEIC ACID; RESTRICTION MAP. // ID BEB8802 RA Bellon B.; RT "Apple MacIntosh programs for nucleic and protein sequence analyses."; RL Nucleic Acids Res. 16:1837-1846(1988). KW NUCLEIC ACID; PROTEIN; SOFTWARE PACKAGE; APPLE MACINTOSH; PASCAL. // ID BEF7701 RA Bernstein F.C., Koetzle T.F., Williams G.J.B., Meyer E.F., Brice M.D., RA Rodgers J.R., Kennard O., Shimanouchi T., Tasumi M.; RT "The protein data bank: a computer-based archival file for RT macromolecular structures."; RL J. Mol. Biol. 112:535-542(1977). KW PROTEIN; DATA BANK; 3D STRUCTURE. // ID BEM8701 RA Bernstein M.; RT "Using spreadsheet languages to understand sequence analysis RT algorithms."; RL CABIOS 3:217-221(1987). KW SPREADSHEET. // ID BEM8702 RA Bernstein M.; RT "Reducing the man - machine barrier: the sequence analysis workbench."; RL CABIOS 3:229-232(1987). // ID BEW7401 RA Beyer W.A., Stein M.L., Smith T.F., Ulam S.M.; RT "A molecular sequence metric and evolutionary trees."; RL Math. Biosci. 19:9-25(1974). KW PHYLOGENY. // ID BIJ8401 RA Bibb M.J., Findlay P.R., Johnson M.W.; RT "The relationship between base composition and codon usage in RT bacterial genes and its use for the simple and reliable identification RT of protein-coding sequences."; RL Gene 30:157-166(1984). KW NUCLEIC ACID; CODING SEQUENCE IDENTIFICATION. // ID BIE8801 RA Bicknell E.J., Rada R., Davidson S., Stander R.; RT "Mapping from GenBank to MEDLINE."; RL Nucleic Acids Res. 16:1667-1680(1988). KW NUCLEIC ACID; DATA BANK. // ID BIH8801 RA Bilofsky H.S., Burks C.; RT "The GenBank genetic sequence data bank."; RL Nucleic Acids Res. 16:1861-1863(1988). KW NUCLEIC ACID; DATA BANK. // ID BIH8601 RA Bilofsky H.S., Burks C., Fickett J.W., Goad W.B., Lewitter F.I., RA Rindone W.P., Swindell C.D., Tung C.-S.; RT "The GenBank genetic sequence databank."; RL Nucleic Acids Res. 14:1-4(1986). KW NUCLEIC ACID; DATA BANK. // ID BIP8401 RA Biro P.A.; RT "DNA sequence handling programs in BASIC for home computers."; RL Nucleic Acids Res. 12:627-631(1984). KW NUCLEIC ACID; BASIC. // ID BIM8401 RA Bishop M.J.; RT "ZSEQ: an interactive DNA sequence analysis program designed for RT microcomputers."; RL Biochem. Soc. Trans. 12:1015-1017(1984). KW NUCLEIC ACID. // ID BIM8402 RA Bishop M.J.; RT "ZPEP: an interactive protein sequence analysis program designed for RT microcomputers."; RL Biochem. Soc. Trans. 12:1017-1017(1984). KW PROTEIN. // ID BIM8403 RA Bishop M.J.; RT "Software for molecular biology. I. Databases and search programs."; RL BioEssays 1:29-31(1984). KW NUCLEIC ACID; PROTEIN; DATA BANK; SOFTWARE PACKAGE; REVIEW. // ID BIM8404 RA Bishop M.J.; RT "Software for molecular biology. II. Restriction mapping and DNA RT sequencing programs."; RL BioEssays 1:75-77(1984). KW NUCLEIC ACID; SOFTWARE PACKAGE; REVIEW; RESTRICTION MAP. // ID BIM8405 RA Bishop M.J.; RT "Software for molecular biology. III. General analysis programs RT classified according to the computer on which they run."; RL BioEssays 1:126-129(1984). KW NUCLEIC ACID; SOFTWARE PACKAGE; REVIEW; IBM-PC; APPLE II; VAX. // ID BIM8501 RA Bishop M.J.; RT "Software for molecular biology. IV. Power where it is needed: RT workstations and networks."; RL BioEssays 2:218-221(1985). KW NUCLEIC ACID; SOFTWARE PACKAGE; REVIEW. // ID BIM8502 RA Bishop M.J., Friday A.E.; RT "Evolutionary trees from nucleic acid and protein sequences."; RL Proc. R. Soc. Lond. B 226:271-302(1985). KW PHYLOGENY. // ID BIM8701 RA Bishop M.J., Friday A.E., Thompson E.A.; RT "Inference of evolutionary relationships."; RL (In) Nucleic acid and protein sequence analysis a practical approach., RL Bishop M.J., Rawlings C.J., Eds., pp359-385, IRL Press, Oxford, (1987). KW PHYLOGENY; REVIEW. // ID BIM8702 RA Bishop M.J., Ginsburg M., Rawlings C.J., Wakeford R.; RT "Molecular sequence databases."; RL (In) Nucleic acid and protein sequence analysis a practical approach., RL Bishop M.J., Rawlings C.J., Eds., pp359-385, IRL Press, Oxford, (1987). KW NUCLEIC ACID; PROTEIN; DATA BANK; REVIEW. // ID BIM8406 RA Bishop M.J., Thompson E.A.; RT "Fast computer search for similar DNA sequences."; RL Nucleic Acids Res. 12:5471-5475(1984). KW NUCLEIC ACID; SIMILARITY SEARCH. // ID BIM8602 RA Bishop M.J., Thompson E.A.; RT "Maximum likelihood alignment of DNA sequences."; RL J. Mol. Biol. 190:159-165(1986). KW PHYLOGENY; NUCLEIC ACID; ALIGNMENT. // ID BLB8601 RA Blaisdell B.E.; RT "A measure of the similarity of sets of sequences not requiring sequence RT alignment."; RL Proc. Natl. Acad. Sci. USA 83:5155-5159(1986). KW NUCLEIC ACID; ALGORITHM. // ID BLS8601 RA Blake S.D., Glorioso J.C.; RT "MSEQ: a microcomputer-based approach to the analysis, display, and RT prediction of protein structure."; RL Biotechniques 4:448-460(1986). KW PROTEIN. // ID BLR8201 RA Blanken R.L., Klotz L.C., Hinnebusch A.G.; RT "Computer comparison of new and existing criteria for constructing RT evolutionary trees from sequence data."; RL J. Mol. Evol. 19:9-19(1982). KW PHYLOGENY. // ID BLP8601 RA Blanz P.A., Kleindienst S.; RT "A computer program for comparative analysis of nucleic acid RT sequences."; RL Nucleic Acids Res. 14:537-541(1986). KW NUCLEIC ACID. // ID BLF8401 RA Blattner F.R., Schroeder J.L.; RT "A computer package for DNA sequence analysis."; RL Nucleic Acids Res. 12:615-617(1984). KW NUCLEIC ACID; SOFTWARE PACKAGE. // ID BLS8501 RA Blose S.H., Hamburger S.A.; RT "Computer-analyzed high resolution two-dimensional gel RT electrophoresis: a new window for protein research."; RL Biotechniques 3:232-2236(1985). KW PROTEIN. // ID BLT8801 RA Blundell T.L., Carney D., Gardner S., Hayes F., Howlin B., Hubbard T.J.P., RA Overington J., Singh D.A., Sibanda B.L., Sutcliffe M.; RT "Knowledge-based protein modelling and design."; RL Eur. J. Biochem. 172:513-520(1988). KW PROTEIN; 3D STRUCTURE; PREDICTION. // ID BLT8501 RA Blundell T.L., Sternberg M.J.E.; RT "Computer-aided design in protein engineering."; RL Trends in Biotechnology 3:228-235(1985). KW PROTEIN; REVIEW. // ID BLT8701 RA Blundell T.L., Sibanda B.L., Sternberg M.J.E., Thornton J.M.; RT "Knowledge-based prediction of protein structures and the design of RT novel molecules."; RL Nature 326:347-352(1987). KW PROTEIN; 3D STRUCTURE; PREDICTION; EXPERT SYSTEM. // ID BLM8201 RA Blumenthal R.M., Rice P.J., Roberts R.J.; RT "Computer programs for nucleic acid sequence manipulations."; RL Nucleic Acids Res. 10:91-101(1982). KW NUCLEIC ACID. // ID BOM8601 RA Boguski M.S., Freeman M., Elshourbagy N.A., Taylor J.M., Gordon J.I.; RT "On computer-assisted analysis of biological sequences: proline RT punctuation. consensus sequences and apolipoprotein repeats."; RL J. Lip. Res. 27:1011-1034(1986). KW PROTEIN; REVIEW. // ID BOH8801 RA Bohr H., Bohr J., Brunak S., Cotterill R.M.J., Lautrup B., Norskov L., RA Olsen O.H., Petersen S.B.; RT "Protein secondary structure and homology by neural networks."; RL FEBS Letters 241:223-228(1988). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION; ARTIFICAL INTELLIGENCE. // ID BOP7401 RA Borer P.N., Dengler B., Tinoco I. Jr., Uhlenbeck O.C.; RT "Stability of ribonucleic double-stranded helices."; RL J. Mol. Biol. 86:843-853(1974). KW NUCLEIC ACID. // ID BOP8801 RA Bork P., Grunwald C.; RT "Pattern search in protein sequence data bases: detection of different RT nucleotides-binding sites."; RL (In) Abstracts of: Application of data bases and microcomputers in RL molecular biology, pp.45-45, Jena (1988). KW PROTEIN; PATTERN; FORTRAN. // ID BOJ8801 RA Bossinger J.A.; RT "The Annotator's Assistant: an expert system for direct submission of RT genetic sequence data."; RL CABIOS 4:197-202(1988). KW NUCLEIC ACID; DATA BANK; EXPERT SYSTEM; IBM-PC. // ID BOD8701 RA Boswell D.R.; RT "Sequence alignment by word processor."; RL Trends in Biochem. Sci. 12:279-280(1987). KW ALIGNMENT; WORD PROCESSOR. // ID BOD8801 RA Boswell D.R.; RT "A program for template matching of protein sequences."; RL CABIOS 4:345-350(1988). KW PROTEIN; PATTERN; ALIGNMENT. // ID BOD8401 RA Boswell D.R., McLachlan A.D.; RT "Sequence comparison by exponentially-damped alignment."; RL Nucleic Acids Res. 12:457-464(1984). KW ALIGNMENT. // ID BOL8801 RA Bougueleret L., Tekaia F., Sauvaget I., Claverie J.-M.; RT "Objective comparison of exon and intron sequences by means of RT 2-dimensional data analysis methods."; RL Nucleic Acids Res. 16:1729-1738(1988). KW NUCLEIC ACID; SPLICE JUNCTIONS. // ID BRE8801 RA Breen E.J., Browne L.H., Glue L., Williams K.L.; RT "The DNA rodent: a portable hand held DNA sequence reader."; RL CABIOS 4:217-217(1988). KW NUCLEIC ACID; GEL SCANNING; IBM-PC. // ID BRC8501 RA Breitenberger C.A., Rajbhandary U.L.; RT "Some highlights of mitochondrial research based on analyses of RT Neurospora crassa mitochondrial DNA."; RL Trends in Biochem. Sci. 10:478-483(1985). KW NUCLEIC ACID. // ID BRV8401 RA Brendel V., Trifonov E.N.; RT "A computer algorithm for testing potential prokaryotic terminators."; RL Nucleic Acids Res. 12:4411-4427(1984). KW NUCLEIC ACID. // ID BRV8501 RA Brendel V., Trifonov E.N.; RT "Computer-aided mapping of DNA-protein interaction sites."; RL (In) The role of data in scientific progress, Glaeser P.S., Ed., RL pp115-118, Elsevier, North Holland, (1985). KW NUCLEIC ACID. // ID BRJ8901 RA Broom J.E., Stockwell P.A., Hill D.F.; RT "GELENT: a sequence gel entry program for keyboard and sonic digitizer RT input."; RL CABIOS 5:155-157(1989). KW NUCLEIC ACID; DATA ENTRY; VAX; PASCAL. // ID BRR8801 RA Bruccoleri R.E., Heinrich G.; RT "An improved algorithm for nucleic acid secondary structure display."; RL CABIOS 4:167-173(1988). KW NUCLEIC ACID; RNA; SECONDARY STRUCTURE; REPRESENTATION; VAX; C LANGUAGE. // ID BRD8801 RA Brutlag D.L.; RT "Expert system simulations as active learning environments."; RL (In) Biomolecular data: A resource in transition, Colwell R.R., Ed., RL pp185-188, Oxford University Press, Oxford, (1988). KW NUCLEIC ACID; EXPERT SYSTEM. // ID BRD8201 RA Brutlag D.L., Clayton J., Friedland P., Kedes L.H.; RT "SEQ: a nucleotide sequence analysis and recombination system."; RL Nucleic Acids Res. 10:279-294(1982). KW NUCLEIC ACID. // ID BRD8701 RA Brutlag D.L., Kristofferson D.; RT "BIONET: an NIH computer resource for molecular biology."; RL (In) Proceedings of the CODATA Workshop, May 1987. KW COMPUTING RESOURCE; BIONET. // ID BRS8701 RA Bryant S.H., Sternberg M.J.E.; RT "Comparison of protein structural profiles by interactive computer RT graphics."; RL J. Mol. Graphics 5:4-7(1987). KW PROTEIN; 3D STRUCTURE; REPRESENTATION. // ID BUP8401 RA Bucher P., Bryan B.; RT "Signal search analysis: a new method to localize and characterize RT functionally important DNA sequences."; RL Nucleic Acids Res. 12:287-305(1984). KW NUCLEIC ACID; PATTERN. // ID BUP8801 RA Bucher P., Trifonov E.N.; RT "CCAAT box revisited: bidirectionality, location and context."; RL J. Biomol. Struct. Dyn. 5:1231-1236(1988). KW NUCLEIC ACID; PROMOTERS; PATTERN. // ID BUC8601 RA Bucholtz C.A., Reisner A.H.; RT "MBIS - an integrated system for the retrieval and analyses of RT sequence data from nucleic acids and proteins."; RL Nucleic Acids Res. 14:265-272(1986). KW NUCLEIC ACID; PROTEIN; SOFTWARE PACKAGE; FORTRAN; VAX. // ID BUH7401 RA Bull H.B., Breese K.; RT "Surface tension of amino acid solutions: a hydrophobicity scale of RT the amino acid residues."; RL Arch. Biochem. Biophys. 161:665-670(1974). KW PROTEIN; HYDROPHOBICITY; SCALE. // ID BUT8601 RA Burglin T.R.; RT "SEQGEL: a versatile and comfortable DNA editor which supports a RT special keyboard and a speech synthesizer."; RL CABIOS 2:99-101(1986). KW NUCLEIC ACID; DATA ENTRY; SPEECH SYNTHESIZER. // ID BUC8501 RA Burks C., Fickett J.W., Goad W.B., Kanehisa M.I., Lewitter F.I., RA Rindone W.P., Swindell C.D., Tung C.-S., Bilofsky H.S.; RT "The GenBank nucleic acid sequence database."; RL CABIOS 1:225-233(1985). KW NUCLEIC ACID; DATA BANK. // ID BUC8701 RA Burks C., Fickett J.W., Goad W.B.; RT "GenBank status report."; RL Science 235:267-268(1987). KW NUCLEIC ACID; DATA BANK. // ID BUL8601 RA Burnett L.; RT "Development of a superior strategy for computer-assisted nucleotide RT sequence analysis."; RL Nucleic Acids Res. 14:47-55(1986). KW NUCLEIC ACID. // ID BUL8501 RA Burnett L., Basten A., Hensley W.J.; RT "An exhaustive tree-searching algorithm for high resolution computer- RT assisted nucleotide sequence analysis."; RL CABIOS 1:153-160(1985). KW NUCLEIC ACID; ALGORITHM. // ID BUL8502 RA Burnett L., Basten A., Hensley W.J.; RT "The SEQANAL and SEQTALK programs: a new method of access to high- RT resolution nucleotide sequence comparison and analysis programs from a RT remote laboratory mini- or microcomputer."; RL CABIOS 1:241-247(1985). KW NUCLEIC ACID. // ID BUL8602 RA Burnett L., Basten A., Hensley W.J.; RT "Should nucleotide sequence analyzing computer algorithms always RT extend homologies by extending homologies ?"; RL Nucleic Acids Res. 14:425-430(1986). KW NUCLEIC ACID. // ID BUB8203 RA Busetta B.; RT "Improving the residual representation of proteins."; RL J. Theor. Biol. 98:621-635(1982). KW PROTEIN; TERTIARY STRUCTURE; REPRESENTATION. // ID BUB8701 RA Busetta B.; RT "The use of folding patterns in the prediction of protein topologies."; RL Biochim. Biophys. Acta 916:54-65(1987). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID BUB8801 RA Busetta B.; RT "The use of folding patterns in the search of protein structural RT similarities: a three-dimensional model of phosphoribosyl RT transferases."; RL Biochim. Biophys. Acta 957:21-33(1988). KW PROTEIN; 3D STRUCTURE; PREDICTION. // ID BUB8201 RA Busetta B., Barrans Y.; RT "The prediction of protein topologies."; RL Biochim. Biophys. Acta 709:73-83(1982). KW PROTEIN. // ID BUB8401 RA Busetta B., Barrans Y.; RT "The prediction of protein domains."; RL Biochim. Biophys. Acta 790:117-124(1984). KW PROTEIN. // ID BUB8202 RA Busetta B., Hospital M.; RT "An analysis of the prediction of secondary structures."; RL Biochim. Biophys. Acta 701:111-118(1982). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID BUA8701 RA Bussard A.; RT "An international biological data bank: hybridoma data bank. General RT considerations on these types of banks."; RL (In) Biotechnology Information '86, Wakeford R., Ed., pp123-136, RL IRL Press, Oxford, (1987). KW NUCLEIC ACID; DATA BANK. // ID CAE8901 RA Cabot E.; RT "A sequence editor for microcomputer users."; RL Trends in Biochem. Sci. 14:14-14(1989). KW NUCLEIC ACID; PROTEIN; DATA ENTRY. // ID CAC8201 RA Calladine C.R.; RT "Mechanics of sequence-dependent stacking of bases in B-DNA."; RL J. Mol. Biol. 161:343-352(1982). KW NUCLEIC ACID; DNA; SECONDARY STRUCTURE. // ID CAG8801 RA Cameron G.N.; RT "The EMBL data library."; RL Nucleic Acids Res. 16:1865-1867(1988). KW NUCLEIC ACID; PROTEIN; DATA BANK. // ID CAJ8701 RA Campione-Piccardo J.; RT "Graphic and DNA sequence interface for the pCP123 database system RT for managing recombinant DNA data."; RL CABIOS 3:359-359(1987). KW NUCLEIC ACID; SOFTWARE PACKAGE; SPREADSHEET. // ID CAJ8801 RA Campione-Piccardo J.; RT "Algorithms for determining the fate of sites and domain boundaries in RT computer simulations of recombinant DNA procedures."; RL CABIOS 4:259-264(1988). KW NUCLEIC ACID; ALGORITHM. // ID CAJ8802 RA Campione-Piccardo J., Moro R.; RT "Modification of DNA ends and detection of restriction enzyme RT recognition sequences in their ligated junctions."; RL CABIOS 4:215-216(1988). KW NUCLEIC ACID; RESTRICTION SITE. // ID CAJ8601 RA Campione-Piccardo J., Ruben M.; RT "An integrated software system for microcomputer management of RT recombinant DNA data."; RL Nucleic Acids Res. 14:571-574(1986). KW NUCLEIC ACID; SOFTWARE PACKAGE; SPREADSHEET. // ID CAG8701 RA Cannon G.C.; RT "Sequence analysis on microcomputers."; RL Science 238:97-103(1987). KW PROTEIN; NUCLEIC ACID; REVIEW. // ID CAC6801 RA Cantor C.R.; RT "The occurrence of gaps in protein sequences."; RL Biochem. Biophys. Res. Commun. 31:410-416(1968). KW PROTEIN; HOMOLOGY; ALIGNMENT. // ID CAR8801 RA Carhart R.E., Cash H.D., Moore J.F.; RT "StrateGene: object-oriented programming in molecular biology."; RL CABIOS 4:3-9(1988). KW NUCLEIC ACID; RESTRICTION MAP; EXPERT SYSTEM. // ID CAP8401 RA Caron P.R.; RT "KLONER: a computer program to simulate recombinant DNA strategies by RT restriction map manipulation."; RL Nucleic Acids Res. 12:731-737(1984). KW NUCLEIC ACID; RESTRICTION MAP. // ID CAH8801 RA Carrillo H., Lipman D.J.; RT "The multiple sequence alignment problem in biology."; RL SIAM J. Appl. Math. 48:1073-1082(1988). KW MULTIPLE ALIGNMENT. // ID CAM8601 RA Carson M., Bugg C.E.; RT "Algorithm for ribbon models of proteins."; RL J. Mol. Graphics 4:121-122(1986). KW PROTEIN; 3D STRUCTURE; REPRESENTATION; ALGORITHM. // ID CET8301 RA Cech T.R., Tanner N.K., Tinoco I. Jr., Weir B.W., Zuker M., RA Perlman P.S.; RT "Secondary structure of the Tetrahymena ribosomal RNA intervening RT sequence: structural homology with fungal mitochondrial intervening RT sequences."; RL Proc. Natl. Acad. Sci. USA 80:3903-3907(1983). KW NUCLEIC ACID; RNA; SECONDARY STRUCTURE; PREDICTION. // ID CER8801 RA Cedergren R.J., Gautheret D., Lapalme G., Major F.; RT "A secondary and tertiary editor for nucleic acids."; RL CABIOS 4:143-146(1988). KW NUCLEIC ACID; RNA; SECONDARY STRUCTURE; REPRESENTATION; IBM-PC. // ID CHH8501 RA Chen H.R., Barker W.C.; RT "The Protein Identification Resource and its applications."; RL Trends in Genetics 1:221-223(1985). KW PROTEIN; DATA BANK. // ID CHC7401 RA Chothia C.; RT "Hydrophobic bonding and accessible surface area in proteins."; RL Nature 248:338-339(1974). KW PROTEIN; 3D STRUCTURE; THEORY. // ID CHC7501 RA Chothia C.; RT "Structural invariants in protein folding."; RL Nature 254:304-308(1975). KW PROTEIN; 3D STRUCTURE; THEORY. // ID CHC7601 RA Chothia C.; RT "The nature of the accessible and buried surfaces in proteins."; RL J. Mol. Biol. 105:1-14(1976). KW PROTEIN; 3D STRUCTURE; THEORY. // ID CHC8401 RA Chothia C.; RT "Principles that determine the structure of proteins."; RL Ann. Rev. Biochem. 53:537-572(1984). KW PROTEIN; 3D STRUCTURE; THEORY; REVIEW. // ID CHC8501 RA Chothia C., Lesk A.M.; RT "Helix movements in proteins."; RL Trends in Biochem. Sci. 10:116-118(1985). KW PROTEIN; SECONDARY STRUCTURE; 3D STRUCTURE; THEORY; REVIEW. // ID CHC8601 RA Chothia C., Lesk A.M.; RT "The relationship between the divergence of sequence and structure in RT proteins."; RL EMBO J. 5:823-826(1986). KW PROTEIN. // ID CHC8602 RA Chothia C., Lesk A.M.; RT "The use of sequence homologies to predict protein structures."; RL (In) Computer graphics and molecular modeling, Fletterick R., RL Zoller M., Eds., pp33-37, Cold Spring Harbor Laboratory, New-York, (1986). KW PROTEIN. // ID CHC7701 RA Chothia C., Levitt M., Richardson D.; RT "Structures of proteins: packing of alpha-helices and pleated sheets."; RL Proc. Natl. Acad. Sci. USA 74:4130-4134(1977). KW PROTEIN; SECONDARY STRUCTURE; 3D STRUCTURE; THEORY. // ID CHP7401 RA Chou P.Y., Fasman G.D.; RT "Prediction of protein conformation."; RL Biochemistry 13:222-245(1974). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID CHP7701 RA Chou P.Y., Fasman G.D.; RT "Beta-turns in protein."; RL J. Mol. Biol. 115:135-175(1977). KW PROTEIN; SECONDARY STRUCTURE; THEORY. // ID CHP7801 RA Chou P.Y., Fasman G.D.; RT "Prediction of the secondary structure of proteins from their amino RT acid sequence."; RL Adv. Enzymol. 47:45-148(1978). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID CHP7901 RA Chou P.Y., Fasman G.D.; RT "Prediction of beta-turns."; RL Biophys. J. 26:367-384(1979). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID CHP7902 RA Chou P.Y., Fasman G.D.; RT "Conservation of chain reversal regions in proteins."; RL Biophys. J. 26:385-400(1979). KW PROTEIN; SECONDARY STRUCTURE. // ID CHG8901 RA Churchill G.A.; RT "Stochastic models for heterogeneous DNA sequences."; RL Bull. Math. Biol. 51:79-94(1989). KW NUCLEIC ACID; STATISTICS. // ID CHV7501 RA Chvatal V., Sankoff D.; RT "Longest common subsequences of two random sequences."; RL J. Applied Prob. 12:306-315(1975). KW RANDOM SEQUENCE. // ID CHV8301 RA Chvatal V., Sankoff D.; RT "An upper-bound techniques for lengths of common subsequences."; RL (In) Time warps, string edits, and macromolecules: the theory and RL practice of sequence comparison, Sankoff D., Kruskal J.B., Eds., RL pp353-357, Addison-Wesley, Reading, (1983). KW RANDOM SEQUENCE. // ID CIH8201 RA Cid H., Bunster M., Arriagada E., Campos M.; RT "Prediction of secondary structure of proteins by means of RT hydrophobicity profiles."; RL FEBS Letters 150:247-254(1982). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION; HYDROPHOBICITY. // ID CLJ8401 RA Claverie J.-M.; RT "A common philosophy and Fortran 77 software package for implementing RT and searching sequence databases."; RL Nucleic Acids Res. 12:397-407(1984). KW SOFTWARE PACKAGE; FORTRAN. // ID CLJ8701 RA Claverie J.-M.; RT "The application of sequence data banks."; RL (In) Biotechnology Information '86, Wakeford R., Ed., pp49-58, RL IRL Press, Oxford, (1987). KW PROTEIN; NUCLEIC ACID; DATA BANK. // ID CLJ8601 RA Claverie J.-M., Bougueleret L.; RT "Heuristic informational analysis of sequences."; RL Nucleic Acids Res. 14:179-196(1986). // ID CLJ8602 RA Claverie J.-M., Bougueleret L.; RT "Neg-entropy and local information content: a new approach to the RT analysis of nucleotide and amino acid sequences."; RL Protein, Nucleic Acid and Enzyme 29:111-122(1986). CC In Japanese. // ID CLJ8603 RA Claverie J.-M., Bricault L.; RT "PseqIP: a nonredundant and exhaustive protein sequence data bank RT generated from 4 major existing collections."; RL Proteins: Structure, Function and Genetics 1:60-65(1986). KW PROTEIN; DATA BANK. // ID CLJ8402 RA Claverie J.-M., Caudron B., Gerard O.; RT "Le systme d'analyse de squences de l'Institut Pasteur (SASIP)."; RL Biofutur 25:35-37(1984). KW NUCLEIC ACID; PROTEIN; SOFTWARE PACKAGE. CC In French. // ID CLJ8501 RA Claverie J.-M., Caudron B., Sauvaget I.; RT "SASIP: the sequence acquisition and analysis system of the Institut RT Pasteur."; RL (In) The role of data in scientific progress, Glaeser P.S., Ed., RL pp135-137, Elsevier, North Holland, (1985). KW NUCLEIC ACID; PROTEIN; SOFTWARE PACKAGE. // ID CLJ8502 RA Claverie J.-M., Sauvaget I.; RT "PGtrans: a protein sequence databank generated by computer RT translation of GenBank nucleotide sequences."; RL Trends in Biochem. Sci. 10:VIII-VIII(1985). KW PROTEIN; DATA BANK. // ID CLJ8503 RA Claverie J.-M., Sauvaget I.; RT "Assessing the biological significance of primary consensus patterns RT using sequence databanks."; RL CABIOS 1:95-104(1985). KW PATTERN. // ID CLJ8504 RA Claverie J.-M., Sauvaget I., Bougueleret L.; RT "Computer generation and statistical analysis of a data bank of RT protein sequences translated from GenBank."; RL Biochimie 67:437-443(1985). KW PROTEIN; DATA BANK. // ID CLJ8201 RA Clayton J., Kedes L.H.; RT "GEL, a DNA sequencing project management system."; RL Nucleic Acids Res. 10:305-321(1982). KW NUCLEIC ACID; SEQUENCE ASSEMBLY. // ID CLB8601 RA Clift B., Haussler D., McConnell R., Schneider T.D., Stormo G.D.; RT "Sequence landscapes."; RL Nucleic Acids Res. 14:141-158(1986). // ID COD8701 RA CODATA task group on the coordination of protein sequence data banks.; RT "Directory of protein and nucleic acid sequence data sources."; RL CODATA Bulletin 65:1-59(1987). KW PROTEIN; NUCLEIC ACID; DATA BANK. // ID COB8501 RA Coghlan B., Fraga S.; RT "Determination of proteinic structures: an experimentation program."; RL Computer Physics Communications 36:391-399(1985). KW PROTEIN; 3D STRUCTURE; PREDICTION. // ID COF8301 RA Cohen F.E., Abarbanel R.M., Kuntz I.D., Fletterick R.J.; RT "Secondary structure assignment for alpha/beta proteins by a RT combinatorial approach."; RL Biochemistry 22:4894-4904(1983). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION; ALGORITHM. // ID COF8601 RA Cohen F.E., Abarbanel R.M., Kuntz I.D., Fletterick R.J.; RT "Turn prediction in proteins using a complex pattern matching RT approach."; RL Biochemistry 25:266-275(1986). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION; PATTERN; ALGORITHM. // ID COF8602 RA Cohen F.E., Kosen P.A., Kuntz I.D., Epstein L.B., Ciardelli T.L., RA Smith K.A.; RT "Structure-activity studies of interleukin-2."; RL Science 234:349-352(1986). KW PROTEIN; 3D STRUCTURE; PREDICTION. // ID COF8701 RA Cohen F.E., Kuntz I.D.; RT "Prediction of the three dimensional structure of human growth RT hormone."; RL Proteins: Structure, Function and Genetics 2:xxx-xxx(1987). KW PROTEIN; 3D STRUCTURE; PREDICTION. // ID COF8001 RA Cohen F.E., Sternberg M.J.E., Taylor W.R.; RT "Analysis and prediction of protein beta-sheet structures by a RT combinatorial approach."; RL Nature 285:378-382(1980). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID COF8201 RA Cohen F.E., Sternberg M.J.E., Taylor W.R.; RT "Analysis and prediction of the packing of alpha-helices against a RT beta-sheet in the tertiary structure of globular proteins."; RL J. Mol. Biol. 156:821-862(1982). KW PROTEIN; 3D STRUCTURE; PREDICTION. // ID COJ8401 RA Collins J.F., Coulson A.F.W.; RT "Applications of parallel processing algorithms for DNA sequence RT analysis."; RL Nucleic Acids Res. 12:181-192(1984). KW NUCLEIC ACID; PARALLEL PROCESSING. // ID COJ8701 RA Collins J.F., Coulson A.F.W.; RT "Molecular sequence comparison and alignment."; RL (In) Nucleic acid and protein sequence analysis a practical approach., RL Bishop M.J., Rawlings C.J., Eds., pp359-385, IRL Press, Oxford, (1987). KW ALIGNMENT; REVIEW. // ID COJ8801 RA Collins J.F., Coulson A.F.W., Lyall A.; RT "The significance of protein sequence similarities."; RL CABIOS 4:67-71(1988). KW PROTEIN; ALIGNMENT; STATISTIC. // ID COE8401 RA Comay E., Nussinov R., Comay O.; RT "An accelerated algorithm for calculating the secondary structure of RT single stranded RNAs."; RL Nucleic Acids Res. 12:53-66(1984). KW NUCLEIC ACID; RNA; SECONDARY STRUCTURE; PREDICTION. // ID COC8701 RA Connell C., Fung S., Heiner C., Bridgham J., Chakerian V., Heron E., RA Jones B., et al.; RT "Automated DNA sequence analysis."; RL Biotechniques 5:342-348(1987). KW NUCLEIC ACID. // ID COM8301 RA Connoly M.L.; RT "Solvent-accessible surfaces of protein and nucleic acids."; RL Science 221:709-713(1983). KW PROTEIN; 3D STRUCTURE; REPRESENTATION. // ID COM8302 RA Connoly M.L.; RT "Analytical molecular surface calculations."; RL J. Appl. Cryst. 16:548-558(1983). KW PROTEIN; 3D STRUCTURE; REPRESENTATION. // ID COM8601 RA Connoly M.L.; RT "Measurements of protein surface shape by solid angles."; RL J. Mol. Graphics 4:3-6(1986). KW PROTEIN; 3D STRUCTURE; REPRESENTATION. // ID COM8602 RA Connoly M.L.; RT "Plotting protein surfaces."; RL J. Mol. Graphics 4:93-96(1986). KW PROTEIN; 3D STRUCTURE; REPRESENTATION. // ID COB8201 RA Conrad B., Mount D.W.; RT "Microcomputer programs for DNA sequence analysis."; RL Nucleic Acids Res. 10:31-38(1982). KW NUCLEIC ACID; SOFTWARE PACKAGE. // ID COR8701 RA Corbett R.J.T., Roche R.S.; RT "The identification of large peptide fragments produced from proteins RT of known sequences: a computerized approach using amino acid RT composition indexes and its application to thermolysin."; RL Analytical Biochem. 162:546-552(1987). KW PROTEIN. // ID COL8701 RA Cornette J.L., Cease K.B., Margalit H., Spouge J.L., Berzofsky J.A., RA DeLisi C.; RT "Hydrophobicity scales and computational techniques for detecting RT amphiphatic structures in proteins."; RL J. Mol. Biol. 195:659-685(1987). KW PROTEIN; HYDROPHOBICITY. // ID COA8001 RA Cornish-Bowden A.; RT "The random character of protein evolution and its effect on the RT reliability of phylogenetic information deduced from amino acid RT sequences and compositions."; RL Biochem. J. 191:349-354(1980). KW PHYLOGENY. // ID COA8301 RA Cornish-Bowden A.; RT "Relating proteins by amino acid composition."; RL Methods in Enzymology 91:60-73(1983). KW PROTEIN. // ID COA8501 RA Cornish-Bowden A.; RT "Nomenclature for incompletely specified bases in nucleic acid RT sequences: recommendations 1984."; RL Nucleic Acids Res. 13:3021-3030(1985). KW NUCLEIC ACID; NOMENCLATURE. // ID COF8801 RA Corpet F.; RT "Multiple sequence alignment with hierarchical clustering." RL Nucleic Acids Res. 16:10881-10890(1988). KW MULTIPLE ALIGMENT. // ID COA8201 RA Corrigan A.J., Huang P.C.; RT "A BASIC microcomputer program for plotting the secondary structure of RT proteins."; RL Computer Programs in Biomedicine 15:163-168(1982). KW PROTEIN; SECONDARY STRUCTURE; BASIC. // ID COW8701 RA Coulson A.F.W., Collins J.F., Lyall A.; RT "Protein and nucleic acid sequence database searching: a suitable case for RT parallel processing."; RL Comput. J. 30:420-424(1987). KW PROTEIN; NUCLEIC ACID; PARALLEL PROCESSING. // ID COJ8601 RA Cowin J.E., Jellis C.H., Rickwood D.; RT "A new method of representing DNA sequences which combines ease of RT visual analysis with machine readability."; RL Nucleic Acids Res. 14:509-515(1986). KW NUCLEIC ACID; SEQUENCE REPRESENTATION. // ID CSJ8801 RA Csirik J., Magyar J.; RT "A computer algorithm to determine the recognition site of restriction RT enzymes."; RL (In) Abstracts of: Application of data bases and microcomputers in RL molecular biology, pp.36-36, Jena (1988). KW NUCLEIC ACID; RESTRICTION SITE. // ID CSJ8701 RA Csirik J., Magyar J., Polner G.; RT "A computer algorithm to determine the recognition site of restriction RT enzymes."; RL CABIOS 3:245-246(1987). KW NUCLEIC ACID; RESTRICTION SITE. // ID CUV8401 RA Cuomo V., Macchiato M.F., Tramontano A.; RT "A statistical method for predicting alpha-helical and beta-sheet RT regions in proteins from their amino acidic sequences."; RL Il Nuevo Cimento 3D:421-434(1984). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION; STATISTIC. // ID DAJ8601 RA Dabrowiak J.C., Skorobogaty A., Rich N., Vary C.P.H., Vournakis J.N.; RT "Computer assisted microdensitometric analysis of footprinting RT autoradiographic data."; RL Nucleic Acids Res. 14:489-499(1986). // ID DAA8701 RA Danckaert A., Mugnier C., Dessen P., Cohen-Solal M.; RT "A computer program for the design of optimal synthetic RT oligonucleotides probes for protein coding genes."; RL CABIOS 3:303-307(1987). KW NUCLEIC ACID; PROTEIN; PROBE SELECTION; FORTRAN. // ID DAF8501 RA Dardel F.; RT "PEGASE: a machine language program for DNA sequence analysis on Apple RT II microcomputer using a binary coding of nucleotides."; RL CABIOS 1:19-22(1985). KW NUCLEIC ACID; APPLE II. // ID DAF8502 RA Dardel F.; RT "A microcomputer program for comparison and alignment of DNA sequence RT gel readings."; RL CABIOS 1:173-175(1985). KW NUCLEIC ACID; SEQUENCE ASSEMBLY. // ID DAF8801 RA Dardel F.; RT "Computer simulation of DNA ligation: determination of initial DNA RT concentrations favouring the formation of recombinant molecules."; RL Nucleic Acids Res. 16:1767-1778(1988). KW NUCLEIC ACID. // ID DAF8802 RA Dardel F., Bensoussan P.; RT "DNAid: a Macintosh full screen editor featuring a built-in regular RT expression interpreter for the search of specific patterns in biological RT sequences using finite state automata."; RL CABIOS 4:483-486(1988). KW NUCLEIC ACID; PROTEIN; DATA ENTRY; PATTERN; APPLE MACINTOSH. // ID DAD6401 RA Davies D.R.; RT "A correlation between amino acid composition and protein structure."; RL J. Mol. Biol. 9:605-609(1964). KW PROTEIN. // ID DAD8501 RA Davison D.; RT "Sequence similarity ('homology') searching for molecular biologists."; RL Bull. Math. Biol. 47:437-474(1985). KW ALIGNMENT; SIMILARITY SEARCH; REVIEW. // ID DAD8401 RA Davison D., Thompson K.; RT "A non-metric sequence alignment program."; RL Bull. Math. Biol. 46:579-590(1984). KW ALIGNMENT. // ID DAG8201 RA Day G.R., Blake R.D.; RT "Statistical significance of symmetrical and repetitive segments in RT DNA."; RL Nucleic Acids Res. 10:8323-8339(1982). KW NUCLEIC ACID; STATISTIC; REPEATS. // ID DAG8401 RA Day G.R., Blake R.D.; RT "Computer analysis and manipulation of DNA sequences."; RL Computers and Chemistry 8:67-73(1984). KW NUCLEIC ACID. // ID DAW8401 RA Day W.H.E.; RT "Properties of Levenshtein metrics on sequences."; RL Bull. Math. Biol. 46:327-332(1984). // ID DAJ8401 RA Dayhoff J.; RT "Distinguished words in data sequences: analysis and applications to RT neural coding and other fields."; RL Bull. Math. Biol. 46:529-543(1984). // ID DAM7401 RA Dayhoff M.O.; RT "Computer analysis of protein sequences."; RL Fed. Proc. 33:2314-2316(1974). KW PROTEIN. // ID DAM7801 RA Dayhoff M.O.; RT "Survey of new data and computer methods of analysis."; RL (In) Atlas of Protein Sequence and Structure, 5 suppl. 3:1-8(1978), RL Nat. Biomed. Res. Found., Washington D.C. KW PROTEIN; REVIEW. // ID DAM8301 RA Dayhoff M.O., Barker W.C., Hunt L.T.; RT "Establishing homologies in protein sequences."; RL Methods in Enzymology 91:524-544(1983). KW PROTEIN. // ID DAM6401 RA Dayhoff M.O., Eck R.V.; RT "Computer aids to protein sequence determination."; RL J. Theor. Biol. 8:97-112(1964). KW PROTEIN. // ID DAM7201 RA Dayhoff M.O., Eck R.V., Park C.M.; RT "A model of evolutionary change in proteins."; RL (In) Atlas of Protein Sequence and Structure, 5:89-99(1972), Nat. RL Biomed. Res. Found., Washington D.C. KW PHYLOGENY. // ID DAM7901 RA Dayhoff M.O., Orcutt B.C.; RT "Methods for identifying proteins by using partial sequences."; RL Proc. Natl. Acad. Sci. USA 76:2170-2174(1979). KW PROTEIN. // ID DAM7202 RA Dayhoff M.O., Park C.M., McLaughlin P.J.; RT "Building a phylogenetic tree: cytochrome c."; RL (In) Atlas of Protein Sequence and Structure, 5:7-16(1972), Nat. RL Biomed. Res. Found., Washington D.C. KW PHYLOGENY. // ID DAM7802 RA Dayhoff M.O., Schwartz R.M., Orcutt B.C.; RT "A model of evolutionary change in proteins."; RL (In) Atlas of Protein Sequence and Structure, 5 suppl. 3:345-352 RL (1978), Nat. Biomed. Res. Found., Washington D.C. KW PHYLOGENY. // ID DAM8101 RA Dayhoff M.O., Schwartz R.M., Chen H.R., Barker W.C., Hunt L.T., RA Orcutt B.C.; RT "Nucleic acid sequence database."; RL DNA 1:51-58(1981). KW NUCLEIC ACID; DATA BANK. // ID DAH8601 RA Dayringer H., Tramontano A., Fletterick R.J.; RT "PROTEUS: graphics software for proteins."; RL (In) Computer graphics and molecular modeling, Fletterick R., RL Zoller M., Eds., pp5-8, Cold Spring Harbor Laboratory, New-York, (1986). KW PROTEIN; 3D STRUCTURE; REPRESENTATION. // ID DES8401 RA DeBanzie J.S., Steeg E.W., Lis J.T.; RT "Update for users of the Cornell sequence analysis package."; RL Nucleic Acids Res. 12:619-625(1984). KW SOFTWARE PACKAGE. // ID DEP8701 RA Deininger P., Smith W.; RT "Voice input of DNA sequence data."; RL Biotechniques 5:6-7(1987). KW NUCLEIC ACID; VOICE ENTRY. // ID DEA8201 RA Delaney A.D.; RT "A DNA sequence handling program."; RL Nucleic Acids Res. 10:61-67(1982). KW NUCLEIC ACID. // ID DEM6201 RA Delbruck M.; RT "Knotting problems in biology."; RL Proc. Symp. Appl. Math. 14:55-63(1962). // ID DEA7501 RA Delcoigne A., Hansen P.; RT "Sequence comparison by dynamic programming."; RL Biometrika 62:661-664(1975). // ID DEG8801 RA Deleage G., Clerc F.C., Roux B., Gautheron D.C.; RT "ANTHEPROT: a package for protein sequence analysis using a RT microcomputer."; RL CABIOS 4:351-356(1988). KW PROTEIN; SOFTWARE PACKAGE; APPLE II. // ID DEG8901 RA Deleage G., Clerc F.F., Roux B.; RT "ANTHEPROT: IBM PC and Apple Macintosh versions."; RL CABIOS 5:159-160(1989). KW PROTEIN; SOFTWARE PACKAGE; APPLE MCINTOSH; IBM PC. // ID DEG8701 RA Deleage G., Roux B.; RT "An algorithm for protein secondary structure prediction based on RT class prediction."; RL Protein Engineering 1:289-294(1987). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID DEG8702 RA Deleage G., Tinland B., Roux B.; RT "A computerized version of the Chou and Fasman method for predicting RT the secondary structure of proteins."; RL Analytical Biochem. 165:200-207(1987). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID DEC8801 RA DeLisi C.; RT "Computers in molecular biology: current applications and emerging RT trends."; RL Science 240:47-52(1988). KW NUCLEIC ACID; PROTEIN; REVIEW. // ID DEM8801 RA Delorme M.-O., Henaut A.; RT "Merging of distance matrices and classification by dynamic clustering."; RL CABIOS 4:453-458(1988). KW PHYLOGENY. // ID DEJ8401 RA Devereux J., Haeberli P., Smithies O.; RT "A comprehensive set of sequence analysis programs for the VAX."; RL Nucleic Acids Res. 12:387-395(1984). KW SOFTWARE PACKAGE; VAX. // ID DIR8301 RA Dickerson R.E.; RT "Base sequence and helix structure variation in B and A DNA."; RL J. Mol. Biol. 166:419-441(1983). KW NUCLEIC ACID; DNA; SECONDARY STRUCTURE; PREDICTION. // ID DIR8201 RA Dickerson R.E., Drew H.R., Conner B.N., Kopka M.L., Pjura P.E.; RT "Helix geometry and hydration in A-DNA, B-DNA, and Z-DNA."; RL Cold Spring Harbor Symp. Quant. Biol. 47:13-24(1982). KW NUCLEIC ACID; DNA; SECONDARY STRUCTURE; THEORY. // ID DIR8202 RA Dickerson R.E., Drew H.R., Connor B.N., Wing R.M., Fratini A.V., RA Kopka M.L.; RT "The anatomy of A-, B- and Z-DNA."; RL Science 216:475-485(1982). KW NUCLEIC ACID; DNA; SECONDARY STRUCTURE; THEORY. // ID DIR8302 RA Dickerson R.E., Kopka M.L., Pjura P.E.; RT "A random-walk model for helix bending in B-DNA."; RL Proc. Natl. Acad. Sci. USA 80:7099-7103(1983). KW NUCLEIC ACID; DNA; SECONDARY STRUCTURE; THEORY. // ID DIS8701 RA Dickman S.; RT "New protein database for Europe."; RL Nature 327:265-265(1987). KW PROTEIN; DATA BANK. // ID DIA8601 RA Diehl A., Rea D.W., Hass L.F.; RT "MATCH-UP/MATRIX: a microcomputer program designed to search for RT protein primary structure homology."; RL CABIOS 2:95-98(1986). KW PROTEIN; DOT MATRIX. // ID DIT8801 RA Dix T.I., Kieronska D.H.; RT "Errors between sites in restriction site mapping."; RL CABIOS 4:117-124(1988). KW NUCLEIC ACID; RESTRICTION MAP. // ID DOI8701 RA Dodd I.B., Egan J.B.; RT "Systematic method for the detection of potential lambda cro-like DNA- RT binding regions in proteins."; RL J. Mol. Biol. 194:557-564(1987). KW PROTEIN; DNA-BINDING. // ID DOP8601 RA Doggett P.E., Blattner F.R.; RT "Personal access to sequence databases on personal computers."; RL Nucleic Acids Res. 14:611-619(1986). KW DATA BANK. // ID DOR7901 RA Doolitle R.F.; RT "Protein evolution."; RL (In) The Proteins, Neurath H., Hills R.L., Eds., 2nd Ed., 4:1-118, RL Academic Press, New-York, (1979). KW PROTEIN; REVIEW. // ID DOR8101 RA Doolitle R.F.; RT "Similar amino acid sequences: chance or common ancestry."; RL Science 214:149-159(1981). KW PROTEIN; COMPARISON MATRIX. // ID DOR8601 RA Doolitle R.F.; RT "Of URFs and ORFs: a primer on how to analyze derived amino acid RT sequences."; RL (In) University Science Books, Mill Valley California, (1986). KW PROTEIN; REVIEW. // ID DOR8401 RA Doolitle R.F., Feng D.F., Johnson M.S.; RT "Computer-based characterization of epidermal growth factor RT precursor."; RL Nature 307:558-560(1984). KW PROTEIN. // ID DOJ8801 RA Dopazo J.; RT "Reducing the effect of the data order in algorithms for constructing RT phylogenetic trees."; RL CABIOS 4:307-307(1988). KW PHYLOGENY. // ID DOR8801 RA Douthart R.J., Schmaltz J.E., Thomas J.J.; RT "Color graphic representations of large sequences in the GEM RT environment."; RL Nucleic Acids Res. 16:1657-1666(1988). KW NUCLEIC ACID; SOFTWARE PACKAGE; VAX. // ID DOJ8601 RA Douthart R.J., Thomas J.J., Rosier S.D., Schmaltz J.E., West J.W.; RT "Cloning simulation in the CAGE environment."; RL Nucleic Acids Res. 14:285-297(1986). KW NUCLEIC ACID; SOFTWARE PACKAGE; VAX. // ID DUM8801 RA Dubnick M., Lewis L.K., Mount D.W.; RT "BIGPROBE: a computer program that predicts the sequence of long RT oligonucleotide probes with high reliability."; RL Nucleic Acids Res. 16:1703-1714(1988). KW NUCLEIC ACID; PROTEIN; PROBE SELECTION; C LANGUAGE; IBM-PC. // ID DUR8101 RA Duggleby R.G., Kinns H., Rood J.I.; RT "A computer program for determining the size of DNA restriction RT fragments."; RL Analytical Biochem. 110:49-55(1981). KW NUCLEIC ACID; RESTRICTION MAP. // ID DUJ8201 RA Dumas J.-P., Ninio J.; RT "Efficient algorithms for folding and comparing nucleic acid RT sequences."; RL Nucleic Acids Res. 10:197-206(1982). KW NUCLEIC ACID; RNA; SECONDARY STRUCTURE; PREDICTION. // ID DUP6801 RA Dunnill P.; RT "The use of helical net-diagrams to represent protein structures."; RL Biophys. J. 8:865-875(1968). KW PROTEIN; SECONDARY STRUCTURE; REPRESENTATION. // ID DUR8401 RA Durand R., Bregegere F.; RT "An efficient program to construct restriction maps from experimental RT data with realistic error levels."; RL Nucleic Acids Res. 12:703-716(1984). KW NUCLEIC ACID; RESTRICTION MAP. // ID EDM8701 RA Edwards M.S., Sternberg M.J.E., Thornton J.M.; RT "Structural and sequence patterns in loops of beta-alpha-beta units."; RL Protein Engineering 1:173-181(1987). KW PROTEIN; PATTERN. // ID EGY8601 RA Eguchi Y.; RT "Amino acid sequence analysis by a microcomputer."; RL Protein, Nucleic Acid and Enzyme 29:210-218(1986). KW PROTEIN; SOFTWARE PACKAGE. CC In Japanese. // ID EID8401 RA Eisenberg D.; RT "Three-dimensional structure of membrane and surface proteins."; RL Ann. Rev. Biochem. 53:595-623(1984). KW PROTEIN; REVIEW. // ID EID8601 RA Eisenberg D., McLachlan A.D.; RT "Solvation energy in protein folding and binding."; RL Nature 319:199-203(1986). KW PROTEIN. // ID EID8402 RA Eisenberg D., Schwarz E., Komaromy M., Wall R.; RT "Analysis of membrane and surface protein sequences with the RT hydrophobic moment plot."; RL J. Mol. Biol. 179:125-142(1984). KW PROTEIN; HYDROPHOBICITY; TRANSMEMBRANE REGION. // ID EID8201 RA Eisenberg D., Weiss R.M., Terwilliger T.C.; RT "The helical hydrophobic moment: a measure of the amphilicity of a RT helix."; RL Nature 299:371-374(1982). KW PROTEIN; HYDROPHOBICITY. // ID EID8403 RA Eisenberg D., Weiss R.M., Terwilliger T.C.; RT "The hydrophobic moment detects periodicity in protein RT hydrophobicity."; RL Proc. Natl. Acad. Sci. USA 81:140-144(1984). KW PROTEIN; HYDROPHOBICITY. // ID EID8202 RA Eisenberg D., Weiss R.M., Terwilliger T.C., Wilcox W.; RT "Hydrophobic moments and protein structure."; RL Faraday Symposia Chemical Society 17:109-120(1982). KW PROTEIN; HYDROPHOBICITY. // ID EID8602 RA Eisenberg D., Wilcox W., Eshita S.; RT "Free energy and protein folding: hydrophobic moments and solvation RT free energy."; RL (In) Computer graphics and molecular modeling, Fletterick R., RL Zoller M., Eds., pp59-65, Cold Spring Harbor Laboratory, New-York, (1986). KW PROTEIN; HYDROPHOBICITY. // ID EID8701 RA Eisenberg D., Wilcox W., Eshita S.; RT "Hydrophobic moments as tools for analysis of protein sequences."; RL (In) Proteins: structure and function, L'Italien J.J., Ed., pp425-436, RL Plenum, New-York, (1987). KW PROTEIN; HYDROPHOBICITY. // ID ELJ8601 RA Elder J.K., Green D.K., Southern E.M.; RT "Automatic reading of DNA sequencing gel autoradiographs using a large RT format digital scanner."; RL Nucleic Acids Res. 14:417-424(1986). KW NUCLEIC ACID; GEL SCANNING. // ID ELJ8701 RA Elder J.K., Southern E.M.; RT "Computer-aided analysis of one-dimensional restriction fragment RT gels."; RL (In) Nucleic acid and protein sequence analysis a practical approach, RL Bishop M.J., Rawlings C.J., Eds., pp359-385, IRL Press, Oxford, (1987). KW NUCLEIC ACID; RESTRICTION FRAGMENT; REVIEW. // ID ELJ8702 RA Elder J.K., Southern E.M.; RT "Automatic reading of DNA sequencing gels autoradiographs."; RL (In) Nucleic acid and protein sequence analysis a practical approach, RL Bishop M.J., Rawlings C.J., Eds., pp359-385, IRL Press, Oxford, (1987). KW NUCLEIC ACID; GEL SCANNING; REVIEW. // ID ELT7801 RA Elleman T.C.; RT "A method for detecting distant evolutionary relationships between RT protein or nucleic acid sequences in the presence of deletions or RT insertions."; RL J. Mol. Evol. 11:143-161(1978). KW PHYLOGENY. // ID EMB8701 RA EMBL Data Library and GenBank(R) staff; RT "A new system for direct submission of data to the nucleotide sequence RT data banks."; RL Nucleic Acids Res. 15:Number 18(1987). KW NUCLEIC ACID; DATA BANK. // ID EME8501 RA Emini E.A., Hughes J.V., Perlow D.S., Boger J.; RT "Induction of Hepatitis A virus-neutralizing antibody by a virus- RT specific synthetic peptide."; RL J. Virol. 55:836-839(1985). KW PROTEIN; ANTIGENIC DETERMINANT; PREDICTION. // ID ENL8501 RA Engel L.W.; RT "Database management for a recombinant DNA bank."; RL Biotechnology 3:329-335(1985). KW NUCLEIC ACID. // ID END8601 RA Engelman D.M., Steitz T.A., Goldman A.; RT "Identifying nonpolar transbilayer helices in amino acid sequences of RT membrane proteins."; RL Ann. Rev. Biophys. Biophys. Chem. 15:321-353(1986). KW PROTEIN; TRANSMEMBRANE REGION; REVIEW. // ID END8101 RA Engelman D.M., Steitz T.A.; RT "The spontaneous insertion of proteins into and across membranes: the RT helical hairpin hypothesis."; RL Cell 23:411-422(1981). KW PROTEIN. // ID ERV8701 RA Erdmann V.A., Wolters J., Digweed M., Pieler T., Lindschau C., RA Lorenz S., Ulbrich N.; RT "Computer analysis of ribosomal 5S RNA sequences and their correlation RT with biochemical structural data."; RL (In) Computer handling and dissemination of data, Glaeser P.S., Ed., RL pp373-380, Elsevier, North Holland, (1987). KW NUCLEIC ACID; RRNA. // ID ERV8702 RA Erdmann V.A., Wolters J.; RT "The Berlin RNA databank."; RL Protein Seq. Data Anal. 1:127-127(1987). KW NUCLEIC ACID; RRNA; DATA BANK. // ID ERB8501 RA Erickson B.W., Altschul S.F.; RT "Significance of DNA or RNA alignments: random permutation methods RT that preserve dinucleotide, trinucleotide or dinucleotide and codon RT usage."; RL Fed. Proc. 44:1086-1086(1985). KW NUCLEIC ACID; RANDOM SEQUENCE. // ID ERB8301 RA Erickson B.W., Sellers P.H.; RT "Recognition of patterns in genetic sequences."; RL (In) Time warps, string edits, and macromolecules: the theory and RL practice of sequence comparison, Sankoff D., Kruskal J.B., Eds., RL pp55-91, Addison-Wesley, Reading, (1983). KW PATTERN. // ID EZA8801 RA Ezhov A.A., Kalambet Y.A., Cherny D.Y.; RT "Neuron net for the recognition of E.coli promoters."; RL (In) Abstracts of: Application of data bases and microcomputers in RL molecular biology, pp.30-30, Jena (1988). KW NUCLEIC ACID; PROMOTERS; ARTIFICAL INTELLIGENCE. // ID FAF8801 RA Facchiano F., Facchiano A., Facchiano A., Ragone R., Colonna G.; RT "New graphic representation of structural parameters of proteins."; RL CABIOS 4:303-305(1988). KW PROTEIN; REPRESENTATION. // ID FAJ7301 RA Farris J.J.; RT "Estimation of the number of amino acid substitutions when back RT mutations can occur."; RL Am. Naturalist 107:531-534(1973). KW PHYLOGENY; EVOLUTIONARY DISTANCE. // ID FAG8501 RA Fasman G.D.; RT "Prediction of protein structure from sequence."; RL Nature 316:22-22(1985). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID FAJ8301 RA Fauchere J.L., Pliska V.E.; RT "Hydrophobic parameters pi of amino acid side chains from the RT partitioning of N-acetyl-amino acid amides."; RL Eur. J. Med. Chem. 18:369-375(1983). KW PROTEIN; HYDROPHOBICITY; SCALE. // ID FAJ8501 RA Fauchere J.L.; RT "How hydrophobic is tryptophan ?"; RL Trends in Biochem. Sci. 10:268-268(1985). KW PROTEIN; HYDROPHOBICITY. // ID FAD8801 RA Faulkner D.V., Jurka J.; RT "Multiple aligned sequence editor (MASE)."; RL Trends in Biochem. Sci. 13:321-322(1988). KW ALIGNMENT EDITOR. // ID FER7601 RA Feldmann R.J.; RT "The design of computing systems for molecular modeling."; RL Ann. Rev. Biophys. Bioeng. 5:477-510(1976). KW PROTEIN; 3D STRUCTURE; REPRESENTATION; REVIEW. // ID FER8501 RA Feldmann R.J., Bing D.H., Potter M., Mainhart C., Furie B., RA Furie C.B., Caporale L.H.; RT "On the construction of computer models of proteins by the extension RT of crystallographic structures."; RL Ann. NY. Acad. Sci. 439:12-43(1985). KW PROTEIN; 3D STRUCTURE; REPRESENTATION. // ID FEJ8101 RA Felsenstein J.; RT "Evolutionary trees from DNA sequences: a maximum likelihood RT approach."; RL J. Mol. Evol. 17:368-376(1981). KW PHYLOGENY. // ID FEJ8202 RA Felsenstein J.; RT "Numerical methods for inferring evolutionary trees."; RL Quat. Rev. Biol. 57:379-404(1982). KW PHYLOGENY; REVIEW. // ID FEJ8501 RA Felsenstein J.; RT "Phylogenies from gene frequencies: a statistical problem."; RL Syst. Zool. 34:300-311(1985). KW PHYLOGENY. // ID FEJ8801 RA Felsenstein J.; RT "Phylogenies from molecular sequences: inference and reliability." RL Ann. Rev. Genet. 22:521-565(1988). KW PHYLOGENY; REVIEW. // ID FEJ8201 RA Felsenstein J., Sawyer S., Kochin R.; RT "An efficient method for matching nucleic acid sequences."; RL Nucleic Acids Res. 10:133-139(1982). KW NUCLEIC ACID. // ID FED8701 RA Feng D.F., Doolitle R.F.; RT "Progressive sequence alignment as a prerequisite to correct RT phylogenetic trees."; RL J. Mol. Evol. 25:351-360(1987). KW PROTEIN; MULTIPLE ALIGNMENT; PHYLOGENY. // ID FED8501 RA Feng D.F., Johnson M.S., Doolitle R.F.; RT "Aligning amino acids sequences: comparison of commonly used methods."; RL J. Mol. Evol. 21:112-125(1985). KW PROTEIN; ALIGNMENT; COMPARISON MATRIX. // ID FEV8901 RA Ferretti V., Sankoff D.; RT "Continuous analog for RNA folding."; RL Bull. Math. Biol. 51:167-171(1989). KW NUCLEIC ACID; RNA; SECONDARY STRUCTURE; PREDICTION. // ID FIG8701 RA Fichant G., Gautier C.; RT "Statistical method for predicting protein coding regions in nucleic RT acid sequences."; RL CABIOS 3:287-295(1987). KW NUCLEIC ACID; CODING SEQUENCE IDENTIFICATION. // ID FIJ8201 RA Fickett J.W.; RT "Recognition of protein coding regions in DNA sequences."; RL Nucleic Acids Res. 10:5303-5318(1982). KW NUCLEIC ACID; CODING SEQUENCE IDENTIFICATION. // ID FIJ8401 RA Fickett J.W.; RT "Fast optimal alignment."; RL Nucleic Acids Res. 12:175-179(1984). KW ALIGNMENT. // ID FIJ8601 RA Fickett J.W.; RT "Correct transmission of protein coding regions in GenBank."; RL Trends in Biochem. Sci. 11:190-190(1986). KW NUCLEIC ACID; PROTEIN; DATA BANK. // ID FIJ8901 RA Fickett J.W., Burks C.; RT "Development of a database for nucleotide sequences."; RL (In) Mathematical methods for DNA sequences, Waterman M.S., Ed., RL pp1-34, CRC Press, Boca Raton, (1989). KW NUCLEIC ACID; DATA BANK. // ID FIP8701 RA Findlay P.R.; RT "Drawing restriction maps with the VAX computer."; RL Trends in Biotechnology 5:90-90(1987). KW NUCLEIC ACID; RESTRICTION SITE; RESTRICTION MAP; VAX. // ID FIW8501 RA Fink W.L.; RT "Microcomputers and phylogenetic analysis."; RL Science 234:1135-1139(1985). KW PHYLOGENY. // ID FIR8701 RA Fishleigh R.V., Robson B., Garnier J., Finn P.W.; RT "Studies on rationales for an expert system approach to the RT interpretation of protein sequence data."; RL FEBS Letters 214:219-225(1987). KW PROTEIN; EXPERT SYSTEM; SECONDARY STRUCTURE; PREDICTION. // ID FIW6601 RA Fitch W.M.; RT "An improved method for testing for evolutionary homology."; RL J. Mol. Biol. 16:9-16(1966). KW PHYLOGENY. // ID FIW6901 RA Fitch W.M.; RT "Locating gaps in amino acid sequences to optimize the homology RT between two proteins."; RL Biochem. Genet. 3:99-108(1969). KW PROTEIN. // ID FIW7001 RA Fitch W.M.; RT "Further improvements in the method of testing for evolutionary RT homology among proteins."; RL J. Mol. Biol. 49:1-14(1970). KW PHYLOGENY. // ID FIW7101 RA Fitch W.M.; RT "Toward defining the course of evolution: minimum change for a RT specific tree topology."; RL Syst. Zool. 20:406-416(1971). KW PHYLOGENY. // ID FIW7501 RA Fitch W.M.; RT "On the problem of discovering the most parsimonious tree."; RL Am. Naturalist 111:223-257(1975). KW PHYLOGENY. // ID FIW8101 RA Fitch W.M.; RT "A non-sequential method for constructing trees and hierarchical RT classifications."; RL J. Mol. Evol. 18:30-37(1981). KW PHYLOGENY. // ID FIW8102 RA Fitch W.M.; RT "The old REH theory remains unsatisfactory and the new REH theory is RT problematical - a reply to Holmquist and Jukes."; RL J. Mol. Evol. 18:60-67(1981). KW PHYLOGENY. // ID FIW8301 RA Fitch W.M.; RT "Calculating the expected frequencies of potential secondary structure RT in nucleic acids as a function of stem length, loop size, base RT composition and nearest-neighbor frequencies."; RL Nucleic Acids Res. 11:4655-4663(1983). KW NUCLEIC ACID; SECONDARY STRUCTURE; STATISTIC. // ID FIW8302 RA Fitch W.M.; RT "Random sequences."; RL J. Mol. Biol. 163:171-176(1983). KW RANDOM SEQUENCE. // ID FIW7601 RA Fitch W.M., Langley C.H.; RT "Protein evolution and molecular clock."; RL Fed. Proc. 35:2092-2097(1976). KW PHYLOGENY. // ID FIW6701 RA Fitch W.M., Margoliash E.; RT "Construction of phylogenetic trees."; RL Science 155:279-284(1967). KW PHYLOGENY. // ID FIW7002 RA Fitch W.M., Markowitz E.; RT "An improved method for determining codon variability in a gene and RT its application to the rate of fixation of mutations in evolution."; RL Biochem. Genet. 4:579-593(1970). KW PHYLOGENY. // ID FIW8201 RA Fitch W.M., Smith T.F.; RT "Implications of minimal length trees."; RL Syst. Zool. 31:68-75(1982). KW PHYLOGENY. // ID FIW8303 RA Fitch W.M., Smith T.F.; RT "Optimal sequence alignments."; RL Proc. Natl. Acad. Sci. USA 80:1382-1386(1983). KW ALIGNMENT. // ID FIW8304 RA Fitch W.M., Smith T.F., Ralph W.W.; RT "Mapping the order of DNA restriction fragments."; RL Gene 22:19-29(1983). KW NUCLEIC ACID; RESTRICTION MAP. // ID FOR8701 RA Folz R.J., Gordon J.I.; RT "Computer-assisted predictions of signal peptidase processing sites."; RL Biochem. Biophys. Res. Commun. 146:870-877(1987). KW PROTEIN; SIGNAL SEQUENCE; VAX; IBM PC; C LANGUAGE; PASCAL. // ID FOR8801 RA Folz R.J., Gordon J.I.; RT "PARA-SITE: a computer algorithm for rapidly analyzing the physical- RT chemical properties of amino acid sequences at sites of co- and post- RT translational protein processing."; RL CABIOS 4:175-179(1988). KW PROTEIN; VAX; C LANGUAGE. // ID FOC8601 RA Fondrat C., Desse P., Le Beux P.; RT "Principle of codification for quick comparisons with the entire RT biomolecule databanks and associated programs in FORTRAN 77."; RL Nucleic Acids Res. 14:197-204(1986). KW FORTRAN. // ID FRS8201 RA Fraga S.; RT "Theoretical prediction of protein antigenic determinants from amino RT acid sequences."; RL Can. J. Chem. 60:2606-2610(1982). KW PROTEIN; ANTIGENIC DETERMINANT; PREDICTION. // ID FRS8301 RA Fraga S.; RT "Determination of antigenic determinants."; RL Computer Physics Communications 30:325-331(1983). KW PROTEIN; ANTIGENIC DETERMINANT; PREDICTION. // ID FRS8501 RA Fraga S., Singh B., Coghlan B.; RT "Theoretical studies of protein structures: prediction of antigenic RT determinants."; RL J. Mol. Structure 120:213-226(1985). KW PROTEIN; ANTIGENIC DETERMINANT; PREDICTION. // ID FRM8401 RA Fredman M.L.; RT "Algorithms for computing evolutionary similarity measures with length RT independent gap penalties."; RL Bull. Math. Biol. 46:553-566(1984). KW ALIGNMENT. // ID FRS8601 RA Freier S.M., Kierzek R., Jaeger J.A., Sugimoto N., Caruthers M.H., RA Neilson T., Turner D.H.; RT "Improved free-energy parameters for predictions of RNA duplex RT stability."; RL Proc. Natl. Acad. Sci. USA 83:9373-9377(1986). KW NUCLEIC ACID; RNA; SECONDARY STRUCTURE; BASE-BAIR ENERGY PARAMETERS. // ID FRR8501 RA Freier S.M., Sinclair A., Neilson T., Turner D.H.; RT "Improved free energies for G.C base-pairs."; RL J. Mol. Biol. 185:645-647(1985). KW NUCLEIC ACID; RNA; SECONDARY STRUCTURE; BASE-PAIR ENERGY PARAMETERS. // ID FRT8801 RA Friedemann T.; RT "Alignment of multiple DNA and protein sequence data."; RL CABIOS 4:213-214(1988). KW MULTIPLE ALIGNMENT; REVIEW. // ID FRP8201 RA Friedland P., Kedes L.H., Brutlag D.L., Iwasaki Y., Bach R.; RT "GENESIS: a knowledge-based genetic engineering simulation system for RT representation of genetic data and experiment planning."; RL Nucleic Acids Res. 10:323-340(1982). KW NUCLEIC ACID; EXPERT SYSTEM. // ID FRE8801 RA Friedrichowicz E., Zinke M.; RT "PROSA - a property based protein sequence analysis implemented for RT personal computers."; RL (In) Abstracts of: Application of data bases and microcomputers in RL molecular biology, pp.46-46, Jena (1988). KW PROTEIN; SOFTWARE PACKAGE. // ID FRB8601 RA Fristensky B.; RT "Improving the efficiency of dot-matrix similarity searches through RT use of an oligomer table."; RL Nucleic Acids Res. 14:597-610(1986). KW NUCLEIC ACID; SIMILARITY SEARCH; DOT MATRIX. // ID FRB8201 RA Fristensky B., Lis J.T., Wu R.; RT "Portable microcomputer software for nucleotide sequence analysis."; RL Nucleic Acids Res. 10:6451-6463(1982). KW NUCLEIC ACID. // ID FRN8701 RA Froelich N., Williams L.C., Casagrande J.T., McMillan M.; RT "Computer analysis of protein sequencing data."; RL (In) Proteins: structure and function, L'Italien J.J., Ed., pp455-460, RL Plenum, New-York, (1987). KW PROTEIN. // ID FRC8401 RA Frommel C.; RT "The apolar surface area of amino acids and its empirical correlation with RT hydrophobic free energy."; RL J. Theor. Biol. 111:247-260(1984). KW PROTEIN; HYDROPHOBICITY; SCALE. // ID FRC8501 RA Frommel C., Holzhutter H.-G.; RT "An estimate of the effect of point mutation and natural selection on RT the rate of amino acid replacement in proteins."; RL J. Mol. Evol. 21:233-257(1985). KW PHYLOGENY. // ID GAC8701 RA Gaboriaud C., Bissery V., Benchetrit T., Mornon J.P.; RT "Hydrophobic cluster analysis: an efficient new way to compare and RT analyse amino acid sequences."; RL FEBS Letters 224:149-155(1987). KW PROTEIN; HYDROPHOBICITY; SECONDARY STRUCTURE; SEQUENCE REPRESENTATION. // ID GAD8501 RA Galas D.J., Eggert M., Waterman M.S.; RT "Rigorous pattern-recognition methods for DNA sequences. Analysis of RT promoter sequences from Escherichia coli."; RL J. Mol. Biol. 186:117-128(1985). KW NUCLEIC ACID; PROMOTERS; PATTERN. // ID GAP8001 RA Garden P.W.; RT "Markov analysis of viral DNA/RNA sequences."; RL J. Theor. Biol. 82:679-6xx(1980). KW NUCLEIC ACID. // ID GAJ7901 RA Garell J.I.; RT "Two-dimensional gel electrophoresis and computer analysis of proteins RT synthesized by clonal cell lines."; RL J. Biol. Chem. 254:7961-7977(1979). KW PROTEIN. // ID GAC8601 RA Gariepy C.E., Lomax M.I., Grossman L.I.; RT "SPLINT: a cubic spline interpolation program for the analysis of RT fragment sizes in one-dimensional electrophoresis gels."; RL Nucleic Acids Res. 14:575-581(1986). // ID GAJ7801 RA Garnier J., Osguthorpe D.J., Robson B.; RT "Analysis of the accuracy and implications of simple methods for RT predicting the secondary structure of globular proteins."; RL J. Mol. Biol. 120:97-120(1978). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID GAR8501 RA Garratt R.C., Taylor W.R., Thornton J.M.; RT "The influence of tertiary structure on secondary structure prediction: RT accessibility versus predictability for beta-structure."; RL FEBS Letters 188:59-62(1985). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION; TERTIARY STRUCTURE. // ID GAO8501 RA Gascuel O.; RT "Structural descriptions. Discrimination and learning of these RT descriptions."; RL Biochimie 67:499-507(1985). // ID GAO8501 RA Gascuel O.; RT "Descriptions structurelles. Discrimination et aprentissage sur ces RT descriptions."; RL Biochimie 67:499-507(1985). KW ARTIFICIAL INTELLIGENCE; TRNA. CC In french. // ID GAO8801 RA Gascuel O., Golmard J.L.; RT "A simple method for predicting the secondary structure of globular RT proteins: implications and accuracy."; RL CABIOS 4:357-365(1988). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID GAM8501 RA Gates M.A.; RT "Simpler DNA sequence representations."; RL Nature 316:219-219(1985). KW NUCLEIC ACID; SEQUENCE REPRESENTATION. // ID GAC8501 RA Gautier C., Gouy M., Louail S.; RT "Non-parametric statistics for nucleic acid sequence study."; RL Biochimie 67:449-453(1985). KW NUCLEIC ACID; STATISTIC. // ID GED8601 RA George D.G., Barker W.C., Hunt L.T.; RT "The protein identification resource (PIR)."; RL Nucleic Acids Res. 14:11-15(1986). KW PROTEIN; DATA BANK. // ID GED8701 RA George D.G., Barker W.C., Hunt L.T.; RT "The Protein Identification Resource (PIR): an on-line computer system for RT the characterization of proteins based on comparisons with previously RT characterized protein sequences."; RL (In) Proteins: structure and function, L'Italien J.J., Ed., pp445-453, RL Plenum, New-York, (1987). KW PROTEIN; DATA BANK. // ID GED8702 RA George D.G., Hunt L.T., Barker W.C.; RT "Nucleic acid data base management."; RL Science 235:1562-1562(1987). KW NUCLEIC ACID; DATA BANK. // ID GED8703 RA George D.G., Mewes H.W., Kihara H.; RT "A standardized format for sequence data exchange."; RL Protein Seq. Data Anal. 1:27-39(1987). KW PROTEIN; NUCLEIC ACID; DATA BANK. // ID GEP8801 RA Gershon P.D., Knowles N.J.; RT "FRAGMAP: a program for restriction map comparison."; RL Nucleic Acids Res. 16:1779-1787(1988). KW NUCLEIC ACID; RESTRICTION MAP. // ID GIA7001 RA Gibbs A.J., McIntyre G.A.; RT "The diagram: a method for comparing sequences. Its use with amino RT acid and nucleotide sequences."; RL Eur. J. Biochem. 16:1-11(1970). // ID GIJ8701 RA Gibrat J.-F., Garnier J., Robson B.; RT "Further developments of protein secondary structure prediction using RT information theory. New parameters and consideration of residue RT pairs."; RL J. Mol. Biol. 198:425-443(1987). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID GII8401 RA Giles I.G.; RT "A microcomputer implementation of the DIAGON sequence comparison and RT alignment program."; RL Biochem. Soc. Trans. 12:1101-1101(1984). KW ALIGNMENT; DOT MATRIX. // ID GIT7801 RA Gingeras T.R., Milazzo J.P., Roberts R.J.; RT "A computer assisted method for the determination of restriction RT enzyme recognition sites."; RL Nucleic Acids Res. 5:4105-4127(1978). KW NUCLEIC ACID; RESTRICTION SITE. // ID GIT7901 RA Gingeras T.R., Milazzo J.P., Scialky D., Roberts R.J.; RT "Computer programs for the assembly of DNA sequences."; RL Nucleic Acids Res. 7:529-545(1979). KW NUCLEIC ACID; SEQUENCE ASSEMBLY. // ID GIT8201 RA Gingeras T.R., Rice P.J., Roberts R.J.; RT "A semi-automated method for the reading of nucleic acid sequencing RT gels."; RL Nucleic Acids Res. 10:103-114(1982). KW NUCLEIC ACID; GEL SCANNING. // ID GIT8001 RA Gingeras T.R., Roberts R.J.; RT "Steps toward computer analysis of nucleotide sequences."; RL Science 209:1322-1328(1980). KW NUCLEIC ACID; SOFTWARE PACKAGE; REVIEW. // ID GIM8701 RA Ginsburg M.; RT "Online services."; RL (In) Nucleic acid and protein sequence analysis a practical approach, RL Bishop M.J., Rawlings C.J., Eds., pp359-385, IRL Press, Oxford, (1987). KW COMPUTING RESOURCE; BIONET; REVIEW. // ID GOM8601 RA Go M.; RT "Protein conformation and gene evolution."; RL Protein, Nucleic Acid and Enzyme 29:90-100(1986). KW PROTEIN; 3D STRUCTURE; THEORY; PHYLOGENY. CC In Japanese. // ID GON8301 RA Go N.; RT "Theoretical studies of protein folding."; RL Ann. Rev. Biophys. Bioeng. 12:183-210(1983). KW PROTEIN; 3D STRUCTURE; THEORY; REVIEW. // ID GON8302 RA Go N., Abe H.; RT "Randomness of the process of protein folding."; RL Int. J. Pept. Prot. Res. 22:622-632(1983). KW PROTEIN; 3D STRUCTURE; THEORY. // ID GON7801 RA Go N., Taketomi H.; RT "Respective roles of short- and long-range interactions in protein RT folding."; RL Proc. Natl. Acad. Sci. USA 75:559-563(1978). KW PROTEIN; 3D STRUCTURE; THEORY. // ID GON7901 RA Go N., Taketomi H.; RT "Studies on protein folding, unfolding and fluctuations by computer RT simulation. III. Effect of short-range interactions."; RL Int. J. Pept. Prot. Res. 13:235-252(1979). KW PROTEIN; 3D STRUCTURE; THEORY; PREDICTION. // ID GON7902 RA Go N., Taketomi H.; RT "Studies on protein folding, unfolding and fluctuations by computer RT simulation. IV. Hydrophobic interactions."; RL Int. J. Pept. Prot. Res. 13:447-461(1979). KW PROTEIN; 3D STRUCTURE; THEORY; PREDICTION. // ID GOW8601 RA Goad W.B.; RT "Computational analysis of genetic sequences."; RL Ann. Rev. Biophys. Biophys. Chem. 15:79-95(1986). KW REVIEW. // ID GOW8201 RA Goad W.B., Kanehisa M.I.; RT "Pattern recognition in nucleic acid sequences I: A general method for RT finding local homologies and symmetries."; RL Nucleic Acids Res. 10:247-263(1982). KW NUCLEIC ACID; PATTERN. // ID GOT8201 RA Gojobory T., Ishii K., Nei M.; RT "Estimation of average number of nucleotide substitutions when the rate RT of substitution varies with nucleotide."; RL J. Mol. Evol. 18:414-423(1982). KW PHYLOGENY; EVOLUTIONARY DISTANCE. // ID GOG8301 RA Golding G.B.; RT "Estimates of DNA and protein sequence divergence: an examination of RT some assumptions."; RL Mol. Biol. Evol. 1:125-142(1983). KW PHYLOGENY. // ID GOE8601 RA Golovanov E.I., Nedospasov S.A.; RT "An effective approach to the identification of subclones of a DNA of RT known nucleotide sequence."; RL CABIOS 2:297-299(1986). KW NUCLEIC ACID. // ID GOM7401 RA Goodman M., Moore G.W., Barnabas J., Matsuda G.; RT "The phylogeny of human globin genes investigated by the maximum RT parsimony method."; RL J. Mol. Evol. 3:1-48(1974). KW PHYLOGENY. // ID GOA7301 RA Gordon A.D.; RT "A sequence-comparison statistic and algorithm."; RL Biometrika 60:197-200(1973). // ID GOO8201 RA Gotoh O.; RT "An improved algorithm for matching biological sequences."; RL J. Mol. Biol. 162:705-708(1982). KW ALIGNMENT. // ID GOO8601 RA Gotoh O.; RT "Alignment of three biological sequences with an efficient traceback RT procedure."; RL J. Theor. Biol. 121:327-337(1986). KW MULTIPLE ALIGNMENT. // ID GOO8701 RA Gotoh O.; RT "Pattern matching of biological sequences with limited storage."; RL CABIOS 3:17-20(1987). KW ALIGNMENT; PATTERN. // ID GOO8602 RA Gotoh O., Tagashira Y.; RT "Sequence search on a supercomputer."; RL Nucleic Acids Res. 14:57-64(1986). // ID GOE8401 RA Gough E.J., Gough N.M.; RT "Direct calculation of the sizes of DNA fragments separated by gel RT electrophoresis using programmes written for a pocket calculator."; RL Nucleic Acids Res. 12:845-853(1984). // ID GOM8701 RA Gouy M.; RT "Secondary structure prediction of RNA."; RL (In) Nucleic acid and protein sequence analysis a practical approach, RL Bishop M.J., Rawlings C.J., Eds., pp359-385, IRL Press, Oxford, (1987). KW NUCLEIC ACID; RNA; SECONDARY STRUCTURE; PREDICTION; REVIEW. // ID GOM8501 RA Gouy M., Gautier C., Attimonelli M., Lanave C., DiPaola G.; RT "ACNUC - a portable retrieval system for nucleic acid sequence RT databases: logical and physical designs and usage."; RL CABIOS 1:167-172(1985). KW NUCLEIC ACID; DATA BANK. // ID GOM8502 RA Gouy M., Gautier C., Milleret F.; RT "System analysis and nucleic acid sequence banks."; RL Biochimie 67:433-436(1985). KW NUCLEIC ACID; DATA BANK. // ID GOM8503 RA Gouy M., Marliere P., Papanicolaou C., Ninio J.; RT "Prediction of secondary structures of nucleic acids: algorithmic and RT physical aspects."; RL Biochimie 67:523-531(1985). KW NUCLEIC ACID; RNA; SECONDARY STRUCTURE; PREDICTION. // ID GOM8401 RA Gouy M., Milleret F., Mugnier C., Jacobzone M., Gautier C.; RT "ACNUC: a nucleic acid sequence data base and analysis system."; RL Nucleic Acids Res. 12:121-127(1984). KW NUCLEIC ACID; SOFTWARE PACKAGE. // ID GRR7401 RA Grantham R.; RT "Amino acid difference formula to help explains protein evolution."; RL Science 185:862-864(1974). KW PROTEIN. // ID GRA8401 RA Gray A.J., Beecher D.E., Olson M.V.; RT "Computer-based image analysis of one-dimensional electrophoretic gels RT used for the separation of DNA restriction fragments."; RL Nucleic Acids Res. 12:473-491(1984). KW NUCLEIC ACID; GEL SCANNING; RESTRICTION FRAGMENT. // ID GRW8401 RA Gray M.W., Sankoff D., Cedergren R.J.; RT "On the evolutionary descent of organisms and organelles: a global RT phylogeny based on a highly conserved structural core in small subunit RT ribosomal RNA."; RL Nucleic Acids Res. 12:5837-5852(1984). KW PHYLOGENY. // ID GRJ8501 RA Greer J.; RT "Protein structure and function by comparative model building."; RL Ann. NY. Acad. Sci. 439:44-63(1985). KW PROTEIN. // ID GRM8601 RA Gribskov M., Burgess R.R., Devereux J.; RT "PEPPLOT, a protein secondary structure analysis program for the UWGCG RT sequence analysis software package."; RL Nucleic Acids Res. 14:327-334(1986). KW PROTEIN. // ID GRM8401 RA Gribskov M., Devereux J., Burgess R.R.; RT "The codon preference plot: graphic analysis of protein coding RT sequences and prediction of gene expression."; RL Nucleic Acids Res. 12:539-549(1984). KW NUCLEIC ACID; CODING SEQUENCE IDENTIFICATION. // ID GRM8801 RA Gribskov M., Homyak M., Edenfield J., Eisenberg D.; RT "Profile scanning for three-dimensional structural patterns in protein RT sequences."; RL CABIOS 4:61-66(1988). KW PROTEIN. // ID GRM8701 RA Gribskov M., McLachlan M., Eisenberg D.; RT "Profile analysis: detection of distantly related proteins."; RL Proc. Natl. Acad. Sci. USA 84:4355-4358(1987). // ID GRU8701 RA Grob U., Stuber K.; RT "GENEXPERT, a program system for nucleic acid sequence structural RT interpretation."; RL CABIOS 3:243-244(1987). KW NUCLEIC ACID; SOFTWARE PACKAGE; VAX; PASCAL. // ID GRU8801 RA Grob U., Stuber K.; RT "Recognition of ill-defined signals in nucleic acid sequences."; RL CABIOS 4:79-88(1988). KW NUCLEIC ACID; PATTERN; PROMOTERS; TRNA; PASCAL; VAX. // ID GRE8601 RA Gross E., Duane J.; RT "Protein graphics: historical development, future directions and RT microcomputer applications."; RL CABIOS 2:173-179(1986). KW PROTEIN; 3D STRUCTURE; REPRESENTATION. // ID GRH8601 RA Gross R.H.; RT "A DNA sequence analysis program for the Apple Macintosh."; RL Nucleic Acids Res. 14:591-596(1986). KW NUCLEIC ACID; APPLE MACINTOSH. // ID GRC8801 RA Grunwald C., Bork P.; RT "Pattern search in sequence data bases: facilities of the computer RT program PAT."; RL (In) Abstracts of: Application of data bases and microcomputers in RL molecular biology, pp.44-44, Jena (1988). KW PROTEIN; PATTERN; FORTRAN. // ID GRR8601 RA Grymes R.A., Travers P., Engelberg A.; RT "GEL - A computer tool for DNA sequencing projects."; RL Nucleic Acids Res. 14:87-98(1986). KW NUCLEIC ACID; SEQUENCE ASSEMBLY. // ID GUH8501 RA Guy H.R.; RT "Amino acid side-chain partition energies and distribution of residues in RT soluble proteins."; RL Biophys. J. 47:61-70(1985). KW PROTEIN; HYDROPHOBICITY; SCALE. // ID HAJ7001 RA Haber J.E., Koshland D.E. Jr.; RT "An evaluation of the relatedness of proteins based on comparison of RT amino acid sequences."; RL J. Mol. Biol. 50:617-639(1970). KW PROTEIN. // ID HAA7801 RA Hagler A.T., Honig B.; RT "On the formation of protein tertiary structure on a computer."; RL Proc. Natl. Acad. Sci. USA 75:554-558(1978). KW PROTEIN; 3D STRUCTURE; PREDICTION. // ID HAJ8501 RA Haiech J., Sallantin J.; RT "Computer search of calcium binding sites in a gene data bank: use of RT learning techniques to build and expert system."; RL Biochimie 67:555-560(1985). KW PROTEIN; EXPERT SYSTEM; PATTERN. // ID HAJ8801 RA Hall J.D., Myers E.W.; RT "A software tool for finding locally optimal alignments in protein and RT nucleic acid sequences."; RL CABIOS 4:35-40(1988). KW ALIGNMENT. // ID HAC8601 RA Hamm C.W., Wilson W.E., Harvan D.J.; RT "Peptide sequencing program."; RL CABIOS 2:115-118(1986). KW PROTEIN. // ID HAG8601 RA Hamm G.H., Cameron G.N.; RT "The EMBL data library."; RL Nucleic Acids Res. 14:5-9(1986). KW NUCLEIC ACID; DATA BANK. // ID HAS8801 RA Hamodrakas S.J.; RT "A protein secondary structure prediction scheme for the IBM PC and RT compatibles."; RL CABIOS 4:473-477(1988). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION; FORTRAN; IBM-PC. // ID HAE8101 RA Hamori E.; RT "Computer-based abstract representations of very long nucleotide RT sequences."; RL Fed. Proc. 40:1647-1647(1981). KW NUCLEIC ACID; SEQUENCE REPRESENTATION. // ID HAE8501 RA Hamori E.; RT "Novel DNA sequence representations."; RL Nature 314:585-585(1985). KW NUCLEIC ACID; SEQUENCE REPRESENTATION. // ID HAE8301 RA Hamori E., Ruskin J.; RT "H curves, a novel method of representation of nucleotide series RT especially suited for long DNA sequences."; RL J. Biol. Chem. 258:1318-1327(1983). KW NUCLEIC ACID; SEQUENCE REPRESENTATION. // ID HAG8501 RA Hannon G.J., Jentoft J.E.; RT "Molecular Designer: an interactive program for the display of protein RT structure on the IBM-PC."; RL CABIOS 1:177-181(1985). KW PROTEIN; 3D STRUCTURE; REPRESENTATION; IBM-PC. // ID HAE8601 RA Harley E.H.; RT "A general DNA analysis program for the Hewlett-Packard Model 86/87 RT microcomputer."; RL Nucleic Acids Res. 14:467-477(1986). KW NUCLEIC ACID. // ID HAR8601 RA Harr R., Fallman P., Haggstrom M., Wahlstrom L., Gustafsson P.; RT "GENEUS, a computer system for DNA and protein sequence analysis RT containing an information retrieval system for the EMBL data RT library."; RL Nucleic Acids Res. 14:273-284(1986). KW NUCLEIC ACID; PROTEIN; SOFTWARE PACKAGE; FORTRAN; PASCAL; VAX. // ID HAR8201 RA Harr R., Hagblom P., Gustafsson P.; RT "Two-dimensional graphic analysis of DNA sequence homologies."; RL Nucleic Acids Res. 10:365-374(1982). KW NUCLEIC ACID; DOT MATRIX. // ID HAR8301 RA Harr R., Haggstrom M., Gustafsson P.; RT "Search algorithm for pattern match analysis of nucleic acid RT sequences."; RL Nucleic Acids Res. 11:2943-2957(1983). KW NUCLEIC ACID; PATTERN. // ID HAK8401 RA Hayashi K., Munakata N.; RT "Basically musical."; RL Nature 310:96-96(1984). KW NUCLEIC ACID; SEQUENCE REPRESENTATION. // ID HEM8201 RA Hendy M.D., Penny D.; RT "Branch and bound algorithms to determine minimal evolutionary trees."; RL Math. Biosci. 59:277-290(1982). KW PHYLOGENY. // ID HEC8901 RA Henneke C.M.; RT "A multiple sequence alignment algorithm for homologous proteins using RT secondary structure information and optionally keying alignments to RT functionally important sites."; RL CABIOS 5:141-150(1989). KW PROTEIN; MULTIPLE ALIGNMENT; ALGORITHM. // ID HID8701 RA Higgins D.G., Gouy M.; RT "Interfacing similarity search software with the sequence retrieval RT system ACNUC."; RL CABIOS 3:239-241(1987). KW SIMILARITY SEARCH; SOFTWARE PACKAGE; FORTRAN. // ID HID8801 RA Higgins D.G, Sharp P.M.; RT "CLUSTAL: a package for performing multiple sequence alignment on a RT microcomputer."; RL Gene 73:237-244(1988). KW MULTIPLE ALIGNMENT; FORTRAN; IBM PC. // ID HID8901 RA Higgins D.G, Sharp P.M.; RT "Fast and sensitive multiple sequence alignments on a microcomputer."; RL CABIOS 5:151-153(1989). KW MULTIPLE ALIGNMENT; FORTRAN; IBM PC. // ID HIP8501 RA Hinds P.W., Blake R.D.; RT "Delineation of coding areas in DNA sequences through assignment of RT codon probabilities."; RL J. Biomol. Struct. Dyn. 3:543-549(1985). KW NUCLEIC ACID; CODING SEQUENCE IDENTIFICATION. // ID HOT8601 RA Hodgman T.C.; RT "The elucidation of protein function from its amino acid sequence."; RL CABIOS 2:181-187(1986). KW PROTEIN; REVIEW. // ID HOT8901 RA Hodgman T.C.; RT "The elucidation of protein function by sequence motif analysis."; RL CABIOS 5:1-14(1989). KW PROTEIN; PATTERN; REVIEW. // ID HOP8401 RA Hogeweg P., Hesper B.; RT "Energy directed folding of RNA sequences."; RL Nucleic Acids Res. 12:67-74(1984). KW NUCLEIC ACID; RNA; SECONDARY STRUCTURE; PREDICTION. // ID HOP8402 RA Hogeweg P., Hesper B.; RT "The alignment of sets of sequences and the construction of RT phylogenetic trees. An integrated method."; RL J. Mol. Evol. 20:175-186(1984). KW PHYLOGENY. // ID HOC8501 RA Holden C.; RT "An omnifarious data bank for biology ?"; RL Science 228:1412-1413(1985). KW DATA BANK. // ID HOC8801 RA Hollister C.; RT "PROPHET - a national computing resource for life science research."; RL Nucleic Acids Res. 16:1873-1875(1988). KW COMPUTING RESOURCE. // ID HOR7801 RA Holmquist R.; RT "A measure of the denseness of a phylogenetic network."; RL J. Mol. Evol. 11:225-231(1978). KW PHYLOGENY. // ID HOR7802 RA Holmquist R.; RT "Evaluation of compositional nonrandomness in proteins."; RL J. Mol. Evol. 11:349-360(1978). // ID HOR7803 RA Holmquist R.; RT "The Reh theory of protein and nucleic acid divergence: a RT retrospective update."; RL J. Mol. Evol. 11:361-374(1978). KW PHYLOGENY. // ID HOR7804 RA Holmquist R.; RT "The augmentation algorithm and molecular phylogenetic trees."; RL J. Mol. Evol. 12:17-24(1978). KW PHYLOGENY. // ID HOR7901 RA Holmquist R.; RT "The method of parsimony: an experimental test and theoretical RT analysis of the adequacy of molecular restoration studies."; RL J. Mol. Biol. 135:939-958(1979). KW PHYLOGENY. // ID HOR7902 RA Holmquist R.; RT "Molecular phylogenetic trees: on the validity of the Goodman-Moore RT augmentation algorithm."; RL J. Mol. Evol. 13:173-178(1979). KW PHYLOGENY. // ID HOR7201 RA Holmquist R., Cantor C.R., Jukes T.H.; RT "Improved procedures for comparing homologous sequences in molecules RT of proteins and nucleic acids."; RL J. Mol. Biol. 64:145-161(1972). KW PROTEIN; NUCLEIC ACID; HOMOLOGY. // ID HOR8101 RA Holmquist R., Conroy T.; RT "The estimation of genetic divergence."; RL J. Mol. Evol. 17:167-181(1981). KW PHYLOGENY. // ID HOR8301 RA Holmquist R., Goodman M., Conroy T., Czelusniak J.; RT "The spatial distribution of fixed mutations within genes coding for RT proteins."; RL J. Mol. Evol. 19:437-448(1983). // ID HOT8701 RA Hopp T.P.; RT "Identification of proteins surfaces and interaction sites by RT hydrophilicity analysis."; RL (In) Proteins: structure and function, L'Italien J.J., Ed., pp437-443, RL Plenum, New-York, (1987). KW PROTEIN; ANTIGENIC DETERMINANT; PREDICTION; HYDROPHOBICITY. // ID HOT8101 RA Hopp T.P., Woods K.R.; RT "Prediction of protein antigenic determinants from amino acid RT sequences."; RL Proc. Natl. Acad. Sci. USA 78:3824-3828(1981). KW PROTEIN; ANTIGENIC DETERMINANT; PREDICTION; HYDROPHOBICITY. // ID HOT8301 RA Hopp T.P., Woods K.R.; RT "A computer program for predicting protein antigenic determinants."; RL Mol. Immunol. 20:483-489(1983). KW PROTEIN; ANTIGENIC DETERMINANT; PREDICTION. // ID HON8801 RA Howell N., Howell B.; RT "A string-searching program for mutational analysis."; RL J. Mol. Biol. 203:618-618(1988). KW NUCLEIC ACID; VAX. // ID HOP8701 RA Hoyle P.; RT "Use of commercial software on IBM personal computers."; RL (In) Nucleic acid and protein sequence analysis a practical approach, RL Bishop M.J., Rawlings C.J., Eds., pp359-385, IRL Press, Oxford, (1987). KW SOFTWARE PACKAGE; REVIEW; IBM-PC. // ID HUR8601 RA Hubbard R.E.; RT "HYDRAS: current and future developments."; RL (In) Computer graphics and molecular modeling, Fletterick R., RL Zoller M., Eds., pp9-11, Cold Spring Harbor Laboratory, New-York, (1986). // ID HUT8701 RA Hubbard T.J.P., Blundell T.L.; RT "Comparison of solvent inaccessible cores of homologous proteins: RT definitions useful for protein modelling."; RL Protein Engineering 1:159-171(1987). KW PROTEIN. // ID HUL8701 RA Hunt L.T., George D.G., Barker W.C.; RT "Short segment searches for compositional similarities in proteins."; RL Fed. Proc. 46:2231-2231(1987). KW PROTEIN; SIMILARITY SEARCH. // ID ISS8901 RA Islam S.A., Sternberg M.J.E.; RT "A relational database of protein structures designed for flexible RT enquiries about conformation."; RL Protein Engineering 2:431-442(1989). KW PROTEIN; TERTIARY STRUCTURE; DATA BANK. // ID ISK8201 RA Isono K.; RT "STRAIN, a computer program for storing information about bacterial RT strains."; RL Mol. Gen. Genet. 186:493-496(1982). // ID ISK8202 RA Isono K.; RT "Computer programs to analyze DNA and amino acid sequence data."; RL Nucleic Acids Res. 10:85-89(1982). KW NUCLEIC ACID; PROTEIN; SOFTWARE PACKAGE. // ID ISK8401 RA Isono K.; RT "A computer program package for storing and retrieving DNA/RNA and RT protein sequence data."; RL Nucleic Acids Res. 12:101-112(1984). KW NUCLEIC ACID; PROTEIN; SOFTWARE PACKAGE; FORTRAN. // ID ITA8601 RA Ito A., Miyajima N., Uchida H.; RT "Biosequence analysis system on a VAX computer."; RL Protein, Nucleic Acid and Enzyme 29:177-186(1986). KW VAX. CC In Japanese. // ID IUP6801 RA IUPAC-IUB Commission on Biochemical Nomenclature.; RT "A one-letter notation for amino acid sequences: tentative rules."; RL J. Biol. Chem. 243:3557-3559(1968). KW PROTEIN; NOMENCLATURE. // ID IUP6601 RA IUPAC-IUB Commission on Biochemical Nomenclature.; RT "Abbreviated designation of amino acid derivatives and peptides, RT tentative rules."; RL J. Biol. Chem. 241:2491-2495(1966). KW PROTEIN; NOMENCLATURE. // ID JAA8401 RA Jacobson A.B., Good L., Simonetti J., Zuker M.; RT "Some simple computational methods to improve the folding of large RT RNAs."; RL Nucleic Acids Res. 12:45-52(1984). KW NUCLEIC ACID; RNA; SECONDARY STRUCTURE; PREDICTION. // ID JAA8501 RA Jacobson A.B., Kumar H., Zuker M.; RT "Effect of spermidine on the conformation of bacteriophage MS2 RNA. RT Electron microscopy and computer modeling."; RL J. Mol. Biol. 181:517-531(1985). KW NUCLEIC ACID; RNA; SECONDARY STRUCTURE; PREDICTION. // ID JAP8201 RA Jagadeeswaran P., McGuire P.M. Jr.; RT "Interactive computer program in sequence analysis."; RL Nucleic Acids Res. 10:433-447(1982). // ID JAB8801 RA Jameson B.A., Wolf H.; RT "The antigenic index: a novel algorithm for predicting antigenic RT determinants."; RL CABIOS 4:181-186(1988). KW PROTEIN; ANTIGENIC DETERMINANT; PREDICTION; ALGORITHM; VAX; FORTRAN. // ID JAJ7901 RA Janin J.; RT "Surface and inside volumes in globular proteins."; RL Nature 277:491-492(1979). KW PROTEIN; 3D STRUCTURE; THEORY. // ID JER8601 RA Jemmerson R., Paterson Y.; RT "Mapping antigenic sites on proteins: implication for the design of RT synthetic vaccines."; RL Biotechniques 4:18-31(1986). KW PROTEIN; ANTIGENIC DETERMINANT. // ID JEH8701 RA Jenson H.B.; RT "Two computer programs for rapid entry of DNA sequence data."; RL CABIOS 3:283-286(1987). KW NUCLEIC ACID; DATA ENTRY; IBM-PC. // ID JEH8801 RA Jenson H.B.; RT "Enhancement of DNA sequence computer programs by using digitized voice RT output."; RL CABIOS 4:218-218(1988). KW NUCLEIC ACID; SPEECH SYNTHESIZER; C LANGUAGE; IBM-PC. // ID JEW8801 RA Jentsch W., Kaden F., Koch I., Selbig J.; RT "GPEE: an expert system integrated protein design tool." RL (In) Abstracts of: Application of data bases and microcomputers in RL molecular biology, pp.31-32, Jena (1988). KW PROTEIN; TERTIARY STRUCTURE; EXPERT SYSTEM. // ID JER8801 RA Jerala R., Turk V.; RT "REGEN: a program for designing gene assembly."; RL Nucleic Acids Res. 16:1759-1766(1988). KW NUCLEIC ACID. // ID JIM8401 RA Jimenez-Montano M.A.; RT "On the syntactic structure of protein sequences and the concept of RT grammar complexity."; RL Bull. Math. Biol. 46:641-659(1984). KW PROTEIN. // ID JOM8401 RA Johnsen M.; RT "JINN, an integrated software package for molecular biologist."; RL Nucleic Acids Res. 12:657-664(1984). KW SOFTWARE PACKAGE. // ID JOL8901 RA Johnson L.M.; RT "End-user searching of biotech databases."; RL Biotechnology 7:378-379(1989). KW NUCLEIC ACID; PROTEIN; DATA BANK. // ID JOM8601 RA Johnson M.S., Doolitle R.F.; RT "A method for the simultaneous alignment of three or more amino acid RT sequences."; RL J. Mol. Evol. 23:267-278(1986). KW MULTIPLE ALIGNMENT. // ID JOR8601 RA Johnston R.E., Mackenzie J.M. Jr., Dougherty W.G.; RT "Assembly of overlapping DNA sequences by a program written in BASIC RT for 64K CP/M and MS-DOS IBM-compatible microcomputers."; RL Nucleic Acids Res. 14:517-527(1986). KW NUCLEIC ACID; SEQUENCE ASSEMBLY; BASIC; IBM-PC. // ID JOD7501 RA Jones D.D.; RT "Amino acid properties and side-chain orientations in proteins: a RT cross correlation approach."; RL J. Theor. Biol. 50:167-183(1975). KW PROTEIN. // ID JON8401 RA Jones M.D.; RT "DNA sequence analysis and the computer."; RL Biochem. Soc. Trans. 12:1018-1020(1984). KW NUCLEIC ACID. // ID JOT7801 RA Jones T.A.; RT "A graphics model building and refinement system for macromolecules."; RL J. Appl. Cryst. 11:268-272(1978). KW PROTEIN; TERTIARY STRUCTURE. // ID JOT8501 RA Jones T.A.; RT "Interactive computer graphics: FRODO."; RL Methods in Enzymology 115:157-171(1985). KW PROTEIN; TERTIARY STRUCTURE; REPRESENTATION. // ID JOT8601 RA Jones T.A.; RT "Using known substructures in protein model building and RT crystallography."; RL EMBO J. 5:819-822(1986). KW PROTEIN; TERTIARY STRUCTURE. // ID JUT8301 RA Jukes T.H.; RT "Evolution of the amino acid codes: inferences from mitochondrial RT codes."; RL J. Mol. Evol. 19:219-225(1983). // ID JUT8401 RA Jukes T.H., Kimura M.; RT "Evolutionary constraints and the neutral theory."; RL J. Mol. Evol. 21:90-92(1984). KW PHYLOGENY. // ID JUJ8401 RA Jungck J.R., Friedman R.M.; RT "Mathematical tools for molecular genetics data: an annotated RT bibliography."; RL Bull. Math. Biol. 46:699-744(1984). KW NUCLEIC ACID; PROTEIN; BIBLIOGRAPHY. // ID KAE8501 RA Kabat E.A.; RT "Immunoglobulin sequence data. The generation of antibody diversity RT and its genetic control."; RL (In) The role of data in scientific progress, Glaeser P.S., Ed., RL pp97-102, Elsevier, North Holland, (1985). KW PROTEIN; DATA BANK. // ID KAE7301 RA Kabat E.A., Wu T.T.; RT "The influence of nearest-neighbor amino acids on the conformation RT of the middle amino acid in proteins: comparison of predicted and RT experimental determination of beta-sheets in concanavalin A."; RL Proc. Natl. Acad. Sci. USA 70:1473-1477(1973). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID KAE7302 RA Kabat E.A., Wu T.T.; RT "The influence of nearest-neighboring amino acids residues on aspects RT of secondary structure of proteins. Attempts to locate alpha-helices RT and beta-sheets."; RL Biopolymers 12:751-754(1973). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID KAE7401 RA Kabat E.A., Wu T.T.; RT "Further comparison of predicted and experimentally determined RT structure of adenylate kinase."; RL Proc. Natl. Acad. Sci. USA 71:4217-4220(1974). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID KAW8301 RA Kabsch W., Sander C.; RT "How good are predictions of protein secondary structure ?"; RL FEBS Letters 155:179-182(1983). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID KAW8302 RA Kabsch W., Sander C.; RT "Dictionary of protein secondary structure: pattern recognition of RT hydrogen-bonded and geometrical features."; RL Biopolymers 22:2577-2637(1983). KW PROTEIN; SECONDARY STRUCTURE; DATA BANK; ALGORITHM. // ID KAW8401 RA Kabsch W., Sander C.; RT "On the use of sequence homologies to predict protein structure: RT identical pentapeptides can have completely different conformations."; RL Proc. Natl. Acad. Sci. USA 81:1075-1078(1984). KW PROTEIN; 3D STRUCTURE; HOMOLOGY. // ID KAW8201 RA Kabsch W., Sander C., Trifonov E.N.; RT "The ten helical twist angles of B-DNA."; RL Nucleic Acids Res. 10:1097-1104(1982). KW NUCLEIC ACID; DNA; SECONDARY STRUCTURE; THEORY. // ID KAY8801 RA Kalambet Y.A., Alexandrov A.A.; RT "Nucleic acids functional signal database project."; RL (In) Abstracts of: Application of data bases and microcomputers in RL molecular biology, pp.22-22, Jena (1988). KW NUCLEIC ACID; DATA BANK; PATTERN. // ID KAN8901 RA Kanaoka M., Kishimoto F., Ueki Y., Umeyama H.; RT "Alignment of protein sequences using the hydrophobic core scores."; RL Protein Engineering 2:347-351(1989). KW PROTEIN; ALIGNMENT; ALGORITHM. // ID KAM8201 RA Kanehisa M.I.; RT "Los Alamos sequence analysis package for nucleic acids and proteins."; RL Nucleic Acids Res. 10:183-196(1982). KW SOFTWARE PACKAGE. // ID KAM8401 RA Kanehisa M.I.; RT "Use of statistical criteria for screening potential homologies in RT nucleic acid sequences."; RL Nucleic Acids Res. 12:203-213(1984). KW NUCLEIC ACID; STATISTIC; HOMOLOGY; ALGORITHM. // ID KAM8601 RA Kanehisa M.I.; RT "Design and application of DNA and protein data banks."; RL Protein, Nucleic Acid and Enzyme 29:187-194(1986). KW NUCLEIC ACID; PROTEIN; DATA BANK. CC In Japanese. // ID KAM8402 RA Kanehisa M.I., Fickett J.W., Goad W.B.; RT "A relational database system for the maintenance and verification of RT the Los Alamos sequence library."; RL Nucleic Acids Res. 12:149-158(1984). // ID KAM8202 RA Kanehisa M.I., Goad W.B.; RT "Pattern recognition in nucleic acid sequences II: An efficient method RT for finding locally stable secondary structure."; RL Nucleic Acids Res. 10:265-278(1982). KW NUCLEIC ACID; SECONDARY STRUCTURE; PREDICTION; PATTERN. // ID KAM8403 RA Kanehisa M.I., Klein P., Greif P., DeLisi C.; RT "Computer analysis and structure prediction of nucleic acids and RT proteins."; RL Nucleic Acids Res. 12:417-428(1984). // ID KAV8801 RA Kapitonov V.V.; RT "Bank of viruses, phages and plasmids genomes."; RL (In) Abstracts of: Application of data bases and microcomputers in RL molecular biology, pp.27-27, Jena (1988). KW NUCLEIC ACID; DATA BANK; PLASMID. // ID KAS8901 RA Karlin S., Blaisdell B.E., Mocarski E.S., Brendel V.; RT "A method to identify distinctive charge configurations in protein RT sequences, with applications to human herpesvirus polypeptides."; RL J. Mol. Biol. 205:165-177(1989). KW PROTEIN; STATISTIC; ALGORITHM. // ID KAS8501 RA Karlin S., Ghandour G.; RT "Comparative statistics for DNA and protein sequences: single sequence RT statistics."; RL Proc. Natl. Acad. Sci. USA 82:5800-5804(1985). KW NUCLEIC ACID; PROTEIN; STATISTIC; RANDOM SEQUENCE; REPEATS. // ID KAS8301 RA Karlin S., Ghandour G., Ost F., Tavare S., Korn L.J.; RT "New approaches for computer analysis of nucleic acid sequences."; RL Proc. Natl. Acad. Sci. USA 80:5660-5664(1983). KW NUCLEIC ACID; HOMOLOGY; REPEATS; DYAD SYMMETRY; ALGORITHM. // ID KAS8801 RA Karlin S., Morris M., Ghandour G., Leung M.-Y.; RT "Algorithms for identifying local molecular sequence features."; RL CABIOS 4:41-51(1988). KW NUCLEIC ACID; HOMOLOGY; REPEATS; DYAD SYMMETRY; ALGORITHM; FORTRAN. // ID KAS8901 RA Karlin S., Ost F., Blaisdell B.E.; RT "Patterns in DNA and amino acid sequences and their statistical RT significance."; RL (In) Mathematical methods for DNA sequences, Waterman M.S., Ed., RL pp133-158, CRC Press, Boca Raton, (1989). KW NUCLEIC ACID; PROTEIN; PATTERN; STATISTIC. // ID KAP8501 RA Karplus P.A., Schulz G.E.; RT "Prediction of chain flexibility in proteins."; RL Naturwissenschaften 72:212-213(1985). KW PROTEIN; ANTIGENIC DETERMINANT. // ID KAY8601 RA Katsube Y.; RT "Tertiary structure and molecular evolution of protein."; RL Protein, Nucleic Acid and Enzyme 29:143-150(1986). KW PROTEIN; 3D STRUCTURE; PHYLOGENY. CC In Japanese. // ID KED8601 RA Keefer D.A.; RT "Word processing software to find specific restriction enzyme cleavage RT sites in DNA."; RL Biotechniques 4:313-314(1986). KW NUCLEIC ACID; RESTRICTION SITE; WORD PROCESSOR. // ID KEB8601 RA Keil B.; RT "Can protein data bank help to define the binding sites of proteolytic RT enzymes."; RL Protein, Nucleic Acid and Enzyme 29:11-21(1986). KW PROTEIN; DATA BANK; CLEAVAGE. CC In Japanese. // ID KEB8701 RA Keil B.; RT "Proteolysis data bank: specificity of alpha-chymotrypsin from RT computation of protein cleavage."; RL Protein Seq. Data Anal. 1:13-20(1987). KW PROTEIN; DATA BANK; CLEAVAGE. // ID KEB8702 RA Keil B.; RT "Databases in molecular biology: a CODATA task group at work."; RL Protein Seq. Data Anal. 1:123-126(1987). KW PROTEIN; NUCLEIC ACID; DATA BANK. // ID KEB8703 RA Keil B.; RT "Protein database network - an indispensable element of fundamental RT information in biology."; RL (In) Computer handling and dissemination of data, Glaeser P.S., Ed., RL pp368-372, Elsevier, North Holland, (1987). KW PROTEIN; DATA BANK. // ID KEP8101 RA Keim P., Heinrikson R.L., Fitch W.M.; RT "An examination of the expected degree of sequence similarity that RT might arise in proteins that have converged to similar conformational RT states."; RL J. Mol. Biol. 151:179-197(1981). KW PROTEIN; 3D STRUCTURE; HOMOLOGY. // ID KEC8401 RA Keller C., Corcoran M., Roberts R.J.; RT "Computer programs for handling nucleic acid sequences."; RL Nucleic Acids Res. 12:379-386(1984). KW NUCLEIC ACID; SOFTWARE PACKAGE. // ID KEJ8301 RA Kelly J.M., Meyer E.F. Jr.; RT "Storage and retrieval of nucleic acid sequence data."; RL Computers and Chemistry 4:107-111(1983). KW NUCLEIC ACID; FORTRAN; STORAGE METHOD. // ID KEL8701 RA Kelly L., Holladay L.A.; RT "Comparison of scales of amino acid sides chains properties by RT conservation during evolution of four proteins."; RL Protein Engineering 1:137-140(1987). KW PROTEIN; HYDROPHOBICITY; SECONDARY STRUCTURE; 3D STRUCTURE. // ID KIT8401 RA Kieser T.; RT "DNAGEL: a computer program for determining DNA sizes using a small RT computer equipped with a graphics tablet."; RL Nucleic Acids Res. 12:679-688(1984). KW NUCLEIC ACID. // ID KIM8001 RA Kimura M.; RT "A simple method for estimating evolutionary rates of base RT substitutions through comparative studies of nucleotide sequences."; RL J. Mol. Evol. 16:111-120(1980). KW PHYLOGENY. // ID KIM8001 RA Kimura M.; RT "A simple model for estimating evolutionary rates of base substitutions RT through comparative studies of nucleotide sequences."; RL J. Mol. Evol. 16:111-120(1980). KW PHYLOGENY; EVOLUTIONARY DISTANCE. // ID KIM8101 RA Kimura M.; RT "Estimation of evolutionary distances between homologous nucleotide RT sequences."; RL Proc. Natl. Acad. Sci. USA 78:454-458(1981). KW PHYLOGENY; EVOLUTIONARY DISTANCE. // ID KIM7201 RA Kimura M., Ohta T.; RT "On the stochastic model for estimation of mutational distance RT between homologous proteins."; RL J. Mol. Evol. 2:87-90(1972). KW PHYLOGENY. // ID KID8901 RA Kingsbury D.T. RT "Computational biology for biotechnology: Part 1. The role of the RT computational infrastructure."; RL Trends in Biotech. 7:82-87(1989). KW NUCLEIC ACID; PROTEIN; DATA BANK; COMPUTING RESOURCE; REVIEW. // ID KID8902 RA Kingsbury D.T. RT "Computational biology for biotechnology: Part 2. Applications of RT scientific computing in biotechnology."; RL Trends in Biotech. 7:126-132(1989). KW NUCLEIC ACID; PROTEIN; TERTIARY STRUCTURE; EXPERT SYSTEM; REVIEW. // ID KIT8801 RA Kirkwood T.B.L.; RT "Identification and analysis of DNA sequence homologies."; RL (In) Proceedings of the XIVth International Biometric Conference, RL pp157-168, Namur, (1988). KW NUCLEIC ACID; SIMILARITY SEARCH. // ID KLM7701 RA Klapper M.H.; RT "The independent distribution of amino acid near neighbor pairs into RT polypeptides."; RL Biochem. Biophys. Res. Commun. 78:1018-1024(1977). KW PROTEIN; STATISTIC; RANDOM SEQUENCE. // ID KLP8603 RA Klein P.; RT "Prediction of protein structural class by discriminant analysis."; RL Biochim. Biophys. Acta 874:205-215(1986). KW PROTEIN; STATISTIC; DISCRIMINANT ANALYSIS; ALGORITHM. // ID KLP8601 RA Klein P., DeLisi C.; RT "Prediction of protein structural class from the amino acid sequence."; RL Biopolymers 25:1659-1672(1986). KW PROTEIN; STATISTIC; DISCRIMINANT ANALYSIS; ALGORITHM. // ID KLP8602 RA Klein P., Jacquez J.A., DeLisi C.; RT "Prediction of protein function by discriminant analysis."; RL Math. Biosci. 81:177-189(1986). KW PROTEIN; FUNCTION PREDICTION; DISCRIMINANT ANALYSIS; ALGORITHM. // ID KLP8401 RA Klein P., Kanehisa M.I., DeLisi C.; RT "Prediction of protein function from sequence properties: discriminant RT analysis of a data base."; RL Biochim. Biophys. Acta 787:221-226(1984). KW PROTEIN; FUNCTION PREDICTION; DISCRIMINANT ANALYSIS; ALGORITHM. // ID KLP8501 RA Klein P., Kanehisa M.I., DeLisi C.; RT "The detection and classification of membrane-spanning proteins."; RL Biochim. Biophys. Acta 815:468-476(1985). KW PROTEIN; TRANSMEMBRANE REGION. // ID KLL8101 RA Klotz L.C., Blanken R.L.; RT "A practical method for calculating evolutionary trees from sequence RT data."; RL J. Theor. Biol. 91:261-272(1981). KW PHYLOGENY. // ID KLL7901 RA Klotz L.C., Komar N., Blanken R.L., Mitchell R.M.; RT "Calculation of evolutionary trees from sequence data."; RL Proc. Natl. Acad. Sci. USA 76:4516-4520(1979). KW PHYLOGENY. // ID KNG8501 RA Kneale G.G., Bishop M.J.; RT "Nucleic acid and protein sequence databases."; RL CABIOS 1:11-17(1985). KW NUCLEIC ACID; PROTEIN; DATA BANK. // ID KNG8401 RA Kneale G.G., Kennard O.; RT "The EMBL nucleotide sequence data library."; RL Biochem. Soc. Trans. 12:1011-1014(1984). KW NUCLEIC ACID; DATA BANK. // ID KOL8601 RA Kolakowski L.F. Jr.; RT "Limitations in the use of word processing software for searching for RT restriction enzyme sites in DNA sequences."; RL Biotechniques 4:101-101(1986). KW NUCLEIC ACID; RESTRICTION SITE; WORD PROCESSOR. // ID KOA8701 RA Kolaskar A.S.; RT "Analysis of biomacromolecular data."; RL (In) Computer handling and dissemination of data, Glaeser P.S., Ed., RL pp381-383, Elsevier, North Holland, (1987). KW NUCLEIC ACID; CODING SEQUENCE IDENTIFICATION. // ID KOA8501 RA Kolaskar A.S., Reddy B.V.B.; RT "A method to locate protein coding regions in DNA of prokaryotic RT systems."; RL Nucleic Acids Res. 13:185-194(1985). KW NUCLEIC ACID; CODING SEQUENCE IDENTIFICATION. // ID KOA8502 RA Kolaskar A.S., Reddy B.V.B.; RT "CDNA sequence data analysis of prokaryotic systems."; RL J. Biosciences 7:49-59(1985). KW NUCLEIC ACID. // ID KON8801 RA Kolchanov N.A.; RT "Data banks and packages of applied programmes and genetics."; RL (In) Abstracts of: Application of data bases and microcomputers in RL molecular biology, pp.24-24, Jena (1988). KW PROTEIN; NUCLEIC ACID; DATA BANK. // ID KOM8401 RA Komaromy M., Govan H.; RT "An inexpensive semi-automated sequence reader for the Apple II RT computer."; RL Nucleic Acids Res. 12:675-678(1984). KW NUCLEIC ACID; DATA ENTRY; APPLE II. // ID KOK8701 RA Konopka A.K., Smythers G.W.; RT "DISTAN - a program which detects significant distances between short RT oligonucleotides."; RL CABIOS 3:193-201(1987). KW NUCLEIC ACID. // ID KOL8401 RA Korn L.J., Queen C.L.; RT "Analysis of biological sequences on small computers."; RL DNA 3:421-436(1984). KW NUCLEIC ACID; PROTEIN; SOFTWARE PACKAGE; REVIEW; VAX; IBM-PC; APPLE II. // ID KOL7701 RA Korn L.J., Queen C.L., Wegman M.N.; RT "Computer analysis of nucleic acid regulatory sequences."; RL Proc. Natl. Acad. Sci. USA 74:4401-4405(1977). KW NUCLEIC ACID; REPEATS; DYAD SYMMETRY; PL/I. // ID KOM8601 RA Kotani M.; RT "A brief survey of the task group on coordination of protein sequence RT data banks and of its parent organization CODATA."; RL Protein, Nucleic Acid and Enzyme 29:8-10(1986). KW PROTEIN; DATA BANK. CC In Japanese. // ID KRV8701 RA Krchnak V., Mach O., Maly A.; RT "Computer prediction of potential immunogenic determinants from RT protein amino acid sequence."; RL Analytical Biochem. 165:200-207(1987). KW PROTEIN; ANTIGENIC DETERMINANT; PREDICTION; BASIC; IBM-PC. // ID KRW7901 RA Krigbaum W.R., Komoriya A.; RT "Local interactions as a structure determinant for protein molecules: RT II."; RL Biochim. Biophys. Acta 576:204-228(1979). KW PROTEIN; 3D STRUCTURE; THEORY. // ID KRW7902 RA Krigbaum W.R., Komoriya A.; RT "Local interactions as a structure determinant for protein molecules: RT III."; RL Biochim. Biophys. Acta 576:229-246(1979). KW PROTEIN; 3D STRUCTURE; THEORY. // ID KRG8601 RA Krishnan G., Kaul R.K., Jagadeeswaran P.; RT "DNA sequence analysis: a procedure to find homologies among many RT sequences."; RL Nucleic Acids Res. 14:543-550(1986). KW NUCLEIC ACID. // ID KRD8701 RA Kristofferson D.; RT "The BIONET electronic network."; RL Nature 325:555-556(1987). KW COMPUTING RESOURCE; BIONET. // ID KRM8201 RA Kroger M., Kroger-Block A.; RT "A flexible new computer program for handling DNA sequence data."; RL Nucleic Acids Res. 10:229-236(1982). KW NUCLEIC ACID; SOFTWARE PACKAGE; UNIVAC. // ID KRM8401 RA Kroger M., Kroger-Block A.; RT "Extension of a flexible computer program for handling DNA sequence RT data."; RL Nucleic Acids Res. 12:113-120(1984). KW NUCLEIC ACID; SOFTWARE PACKAGE; UNIVAC. // ID KRM8402 RA Kroger M., Kroger-Block A.; RT "Simplified computer programs for search of homology within nucleotide RT sequences."; RL Nucleic Acids Res. 12:193-201(1984). KW NUCLEIC ACID. // ID KRJ8301 RA Kruskal J.B.; RT "An overview of sequence comparison."; RL (In) Time warps, string edits, and macromolecules: the theory and RL practice of sequence comparison, Sankoff D., Kruskal J.B., Eds., RL pp1-44, Addison-Wesley, Reading, (1983). KW REVIEW. // ID KRJ8302 RA Kruskal J.B., Sankoff D.; RT "An anthology of algorithms and concepts for sequence comparison."; RL (In) Time warps, string edits, and macromolecules: the theory and RL practice of sequence comparison, Sankoff D., Kruskal J.B., Eds., RL pp265-310, Addison-Wesley, Reading, (1983). KW REVIEW. // ID KRS8501 RA Krystek S.R. Jr., Dias J.A., Reichert L.E. Jr., Andersen T.T.; RT "Prediction of antigenic sites in follicle-stimulating hormones: RT difference profiles enhance antigenicity prediction methods."; RL Endocrinology 117:1125-1131(1985). KW PROTEIN; HYDROPHOBICITY; ANTIGENIC DETERMINANT; PREDICTION. // ID KRS8502 RA Krystek S.R. Jr., Reichert L.E. Jr., Andersen T.T.; RT "Analysis of computer-generated hydropathy profiles for human RT glycoprotein and lactogenic hormones."; RL Endocrinology 117:1110-1124(1985). KW PROTEIN; HYDROPHOBICITY. // ID KUY8201 RA Kubota Y., Nishikawa K., Takahashi S., Ooi T.; RT "Correspondence of homologies in amino acid sequence and tertiary RT structure of protein molecules."; RL Biochim. Biophys. Acta 701:242-252(1982). KW PROTEIN; 3D STRUCTURE. // ID KUY8101 RA Kubota Y., Takahashi S., Nishikawa K., Ooi T.; RT "Homology in protein sequences expressed by correlation coefficients."; RL J. Theor. Biol. 91:347-361(1981). KW PROTEIN. // ID KUM8701 RA Kudo M., Lida Y., Shimbo M.; RT "Syntactic pattern analysis of 5'-splice site sequences of mRNA RT precursors in higher eukaryote genes."; RL CABIOS 3:319-324(1987). KW NUCLEIC ACID; SPLICE JUNCTIONS; PATTERN. // ID KUS8401 RA Kuhara S., Matsuo F., Futamura S., Fujita A., Shinohara T., Takagi T., RA Saskaki Y.; RT "GENAS: a database system for nucleic acid sequence analysis."; RL Nucleic Acids Res. 12:89-99(1984). KW NUCLEIC ACID. // ID KUT8701 RA Kunisawa T., Horimoto K., Otsuka J.; RT "Accumulation pattern of amino acid substitutions in protein RT evolution."; RL J. Mol. Evol. 24:357-365(1987). KW PHYLOGENY. // ID KUI7601 RA Kuntz I.D., Crippen G.M., Kollman P.A., Kimelman D.; RT "Calculation of protein tertiary structure."; RL J. Mol. Biol. 106:983-994(1976). KW PROTEIN; 3D STRUCTURE; PREDICTION. // ID KYJ8201 RA Kyte J., Doolitle R.F.; RT "A simple method for displaying the hydropathic character of a RT protein."; RL J. Mol. Biol. 157:105-132(1982). KW PROTEIN; HYDROPHOBICITY. // ID LAL8401 RA Lagrimini L.M., Brentano S.T., Donelson J.E.; RT "A DNA sequence analysis package for the IBM personal computer."; RL Nucleic Acids Res. 12:605-614(1984). KW NUCLEIC ACID; SOFTWARE PACKAGE; IBM-PC. // ID LAJ8701 RA Lake J.A.; RT "A rate-independent technique for analysis of nucleic acid sequences: RT evolutionary parsimony."; RL Mol. Biol. Evol. 4:167-191(1987). KW PHYLOGENY. // ID LAC8401 RA Lanave C., Peparata G., Saccone C., Serio G.; RT "A new method for calculating evolutionary substitution rates."; RL J. Mol. Evol. 20:86-93(1984). KW PHYLOGENY. // ID LAG8601 RA Landau G.M., Vishkin U., Nussinov R.; RT "An efficient string matching algorithm with k differences for RT nucleotide and amino acid sequences."; RL Nucleic Acids Res. 14:31-46(1986). KW ALIGNMENT; ALGORITHM. // ID LAG8701 RA Landau G.M., Vishkin U., Nussinov R.; RT "An efficient string matching algorithm with k substitutions for RT nucleotide and amino acid sequences."; RL J. Theor. Biol. 126:483-490(1987). KW ALIGNMENT; ALGORITHM. // ID LAG8801 RA Landau G.M., Vishkin U., Nussinov R.; RT "Locating alignments with k differences for nucleotide and amino acid RT sequences."; RL CABIOS 4:19-24(1988). KW ALIGNMENT; ALGORITHM. // ID LAE8901 RA Lander E.S.; RT "Analysis with restriction enzymes."; RL (In) Mathematical methods for DNA sequences, Waterman M.S., Ed., RL pp35-52, CRC Press, Boca Raton, (1989). KW NUCLEIC ACID; RESTRICTION MAP. // ID LAB8601 RA Lang B.F., Burger G.; RT "A collection of programs for nucleic acid and protein analysis, RT written in FORTRAN 77 for IBM-PC compatible microcomputers."; RL Nucleic Acids Res. 14:455-465(1986). KW NUCLEIC ACID; PROTEIN; SOFTWARE PACKAGE; IBM-PC; FORTRAN. // ID LAG8201 RA Lapalme G., Cedergren R.J., Sankoff D.; RT "An algorithm for the display of nucleic acid secondary structure."; RL Nucleic Acids Res. 10:8351-8356(1982). KW NUCLEIC ACID; RNA; SECONDARY STRUCTURE; REPRESENTATION. // ID LAR8201 RA Larson R., Messing J.; RT "Apple II software for M13 shotgun DNA sequencing."; RL Nucleic Acids Res. 10:39-49(1982). KW NUCLEIC ACID; APPLE II. // ID LAR8301 RA Larson R., Messing J.; RT "Apple II computer software for DNA and protein sequence data."; RL DNA 2:31-35(1983). KW NUCLEIC ACID; PROTEIN; SOFTWARE PACKAGE; APPLE II. // ID LAR8501 RA Lathe R.; RT "Synthetic oligonucleotide probes deduced from amino acid sequence RT data. Theoretical and practical considerations."; RL J. Mol. Biol. 183:1-12(1985). KW NUCLEIC ACID; PROTEIN; PROBE SELECTION. // ID LAR8401 RA Lathe R., Findlay R.; RT "Machine-readable DNA sequences."; RL Nature 311:610-610(1984). KW NUCLEIC ACID; SEQUENCE REPRESENTATION. // ID LAR8502 RA Lathe R., Findlay R.; RT "Reply to Hamori's letter."; RL Nature 314:585-586(1985). KW NUCLEIC ACID; SEQUENCE REPRESENTATION. // ID LAJ8201 RA Lautenberger J.A.; RT "A program for reading DNA sequence gels using a small computer RT equipped with a graphic tablet."; RL Nucleic Acids Res. 10:27-30(1982). KW NUCLEIC ACID; GEL SCANNING. // ID LAC8601 RA Lawrence C.B.; RT "Data structures for DNA sequence manipulation."; RL Nucleic Acids Res. 14:205-216(1986). KW NUCLEIC ACID. // ID LAC8801 RA Lawrence C.B., Goldman D.A.; RT "Definition and identification of homology domains."; RL CABIOS 4:25-33(1988). KW ALIGNMENT; ALGORITHM; C LANGUAGE. // ID LAC8602 RA Lawrence C.B., Goldman D.A., Hood R.T.; RT "Optimized homology searches of the gene and protein sequence data RT banks."; RL Bull. Math. Biol. 48:569-583(1986). // ID LES8801 RA Le S.-Y., Chen J.-H., Currey K.M., Maizel J.V. Jr.; RT "A program for predicting significant RNA secondary structures."; RL CABIOS 4:153-159(1988). KW NUCLEIC ACID; RNA; SECONDARY STRUCTURE; PREDICTION. // ID LES8802 RA Le S.-Y., Chen J.-H., Nussinov R., Maizel J.V. Jr.; RT "An improved secondary structure computation method and its application RT to intervening sequences in the human alpha-like globin mRNA precursors."; RL CABIOS 4:337-344(1988). KW NUCLEIC ACID; RNA; SECONDARY STRUCTURE; PREDICTION. // ID LEG8401 RA Lennon G.G., Nussinov R.; RT "Homonyms, synonyms and mutations of the sequence/structure RT vocabulary."; RL J. Mol. Biol. 175:425-430(1984). // ID LEJ7701 RA Lenstra J.A.; RT "Evaluation of secondary structure predictions in proteins."; RL Biochim. Biophys. Acta 491:333-338(1977). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID LEA8401 RA Lesk A.M.; RT "The analysis of protein structures: new insights from a growing data RT base."; RL BioEssays 1:105-110(1984). KW PROTEIN; 3D STRUCTURE; THEORY. // ID LEA8501 RA Lesk A.M.; RT "Coordination of sequence data."; RL Nature 314:318-319(1985). KW PROTEIN; NUCLEIC ACID; DATA BANK. // ID LEA8601 RA Lesk A.M.; RT "Three-dimensional structures of proteins: archives, research and RT applications."; RL Protein, Nucleic Acid and Enzyme 29:101-110(1986). KW PROTEIN; 3D STRUCTURE; THEORY; REPRESENTATION. CC In Japanese. // ID LEA8602 RA Lesk A.M.; RT "Protein structure, evolution, and conformational change."; RL Protein, Nucleic Acid and Enzyme 29:123-135(1986). KW PROTEIN; 3D STRUCTURE; THEORY. CC In Japanese. // ID LEA8701 RA Lesk A.M.; RT "The Biocomputing program at EMBL."; RL Trends in Biotechnology 5:317-318(1987). KW PROTEIN; NUCLEIC ACID; DATA BANK; 3D STRUCTURE; THEORY. // ID LEA8502 RA Lesk A.M., Harman K.D.; RT "Computer-generated pictures of proteins."; RL Methods in Enzymology 115:381-390(1985). KW PROTEIN; TERTIARY STRUCTURE; REPRESENTATION. // ID LEA8603 RA Lesk A.M., Levitt M., Chothia C.; RT "Alignment of the amino acid sequences of distantly related proteins RT using variable gap penalties."; RL Protein Engineering 1:77-78(1986). KW PROTEIN; ALIGNMENT. // ID LES8301 RA Levene S., Crothers D.M.; RT "A computer graphics study of sequence-directed bending in DNA."; RL J. Biomol. Struct. Dyn. 1:429-435(1983). KW NUCLEIC ACID. // ID LEJ8601 RA Levin J.M., Robson B., Garnier J.; RT "An algorithm for secondary structure determination in proteins based RT on sequence similarity."; RL FEBS Letters 205:303-308(1986). KW PROTEIN; SECONDARY STRUCTURE; PREDICTION. // ID LEM7601 RA Levitt M.; RT "A simplified representation of protein conformations for rapid RT simulation of protein folding."; RL J. Mol