X-NEWS: iubio bionet.software: 71 Path: cica!iuvax!bionet!THEORY.BCHS.UH.EDU!dbd From: dbd@THEORY.BCHS.UH.EDU (Dan Davison) Newsgroups: bionet.software Subject: DOS - current index of Genbank-server@uhnix2.uh.edu Message-ID: <9004232313.AA00697@theory.BCHS.UH.EDU> Date: 23 Apr 90 23:13:14 GMT Sender: daemon@genbank.BIO.NET Lines: 112 Some files have been added to the DOS section of the Genbank-server@uhnix2. uh.edu. The complete index is shown below. The server is accessible from Bitnet/EARN, the Internet, Usenet, and most gatewayed networks. For information on the Genbank-server(*), send the subject line "help" to: genbank-server@uhnix2.uh.edu and for further information on the DOS files, send the lines: send dos help send dos index dan davison/ davison@uh.edu /DAVISON@UHOU (*) the genbank-server at the university of Houston is not funded or associated in any way with NIH or its GenBank contractors and subcontractors. Size | last | program | (bytes)| update | name | description 142257 Jan 1 14:26 alx3.uue Gotoh's alignment pgms 94522 Jan 1 14:26 alx3src.uue Source for above 2768 Nov 20 19:39 decode directions for decoding .UUE files 55703 Jan 7 01:47 elbamap.uue Electrophoresis band manager 177486 Jan 1 14:26 emacsexe.uue MicroEmacs, executables 192098 Jan 1 14:26 emacsman.uue MicroEmacs, documentation 97777 Jan 1 14:26 gelpgm.uue Thompson Gel program 2927 Nov 20 19:40 help help file (see note below) 19370 Jan 1 14:26 linear.uue 280066 Jan 1 14:26 molecule.uue Thompson Molecule pgm; C/EGA & Herc. vers. 101496 Jan 1 14:26 msker232.uue MS-Kermit 2.32/A, executable only 194484 Jan 2 17:05 mskerdoc.uue Documentation for MS-Kermit (>300kb) 104185 Jan 1 14:26 oligomak.uue Beadles et al. oligo mutant maker 126261 Jan 2 17:05 pak201.uue archiver used by UH & EMBL 110237 Jan 2 17:05 pcfldsrc.uue RNA sequence folding source 165382 Jan 2 17:05 pcfoldex.uue RNA sequence folding executables 166401 Jan 1 14:26 plasmid.uue Plasmid Paint, requires all others 22431 Jan 1 14:26 plasmids.uue Plasmid Paint sources 351864 Jan 1 14:27 seqaid.uue Roufa&Rhodes NA/P analy.,12/6/89 update 121723 Jan 1 14:27 tdalnexe.uue Thompson and Davison alignment executables 130067 Jan 1 14:27 tdalnsrc.uue Thompson and Davison source 19430 Nov 20 19:40 uud.c C source to a uudecoder (see note below) 5415 Nov 20 19:40 uud19.bas bootstrap uudecoder, use on uuembl.uue 6238 Nov 20 19:40 uue.c C source to a uuencoder (see note) 33118 Oct 18 17:10 uuembl.uue REQUIRED. Creates UUDECODE needed for converting all these .UUE files to self-extracting .EXE files uud19.bas BASIC source code for UUDECODE. Use to create UUDECODE file that *DECODES* UUEMBL.UUE NOTE: You MUST use the UUDECODE from UUEMBL.UUE to uudecode all other UUE files on this server. See the file HELP, retrieve with SEND SOFTWARE HELP. uud.c, uue.c C source code for uuencode/uudecode. Same caution applies. Use these only to UUDECODE UUEMBL.UUE with the commmand "uud uuembl.uue" after com- piling with your favorite C compiler. HELP A file which gives general guidelines and tips on retrieving sw from this server. If you have picked up files off the UH server before 1 January 1990 and not been able to unpack them, get PAK201.UUE, UUDECODE it to PAK201.EXE, type "PAK201.EXE" which will extract several files from PAK, then run PAK on the files you retrieved: PAK X MOLECULE.EXE (if the MOLECULE.UUE file uudecoded to MOLECULE.EXE), and a working version of the software will be produced. The UUEs were produced from files made by PAK, but without the /EXE option, which makes self-extracting archive files. New Additions: *186384 Feb 24 20:53 clones.uaa Clone, strain mgmt db., pt. 1 * 45419 Feb 24 20:53 clones.uab Part II of above * 193584 Feb 24 20:53 fast.uue prot. struct. pred. 11572 Jan 31 13:07 fv126.uue ARC, PAK, PK, etc. File Viewer-contents 46698 Jan 31 13:07 lharc112.uue LHarchive utility 74254 Feb 24 20:53 ligate.uue ligation conditions calculation 94719 Jan 31 13:07 list72a.uue "more"-like utility 126261 Jan 31 13:07 pak201.uue PAK archiver/unarchiver 33795 Jan 31 13:07 pkfind11.uue Phil Katz archive file viewer 167835 Jan 31 13:07 pkpak361.uue Phil Katz archive/unarchiver 190775 Jan 31 13:08 pkzip102.uue Katz ZIP file archive/unarchiver *107636 Feb 24 20:54 pronet.uue Neural net prot. struct. pred. 49563 Jan 31 13:08 scanv55.uue Version 55 file scanner 159950 Jan 31 13:08 shez50.uue Full-screen arhive manipulator-friendly 5122 Jan 31 13:08 validat3.uue uncorruptable checksum calculator 116224 Jan 31 13:08 zoo201.uue ZOO archiver/unarchiver * 44740 Apr 23 16:59 detar.uue MS/PC DOS version of unix "tar" pgm * 79196 Apr 23 16:59 digiseq.uue Digitizer input of sequence data * 88005 Apr 23 17:00 dnaclone.uue DNA clone,strain mgmt. *171923 Apr 23 17:00 ezfit.uue enzyme kinetics fitting * 28411 Apr 23 17:00 hydrasc.uue plot 2 prot.regions w/ sim. hydro, 2nd st * 47138 Apr 23 17:00 motif.uue motif searching program * 56056 Apr 23 17:00 pattern.uue pattern searching pgm *117350 Apr 23 17:00 predict.uue prot. 2nd stru. predictions *186190 Apr 23 17:00 sdse.uaa simulation of DNA seq. evol., pt. 1 * 48094 Apr 23 17:01 sdse.uab simulation of DNA seq. evol., pt. 2 * 62291 Apr 23 17:01 sigseq.uue pred. of sig. seq. cleavage site * 56638 Apr 23 17:01 typeseq.uue seq. input with keyboard (*) courtesy EMBL File Server. dbd last change 4/23/90