From bronze!news.cs.indiana.edu!spool.mu.edu!uunet!paladin.american.edu!auvm!COMP.BIOZ.UNIBAS.CH!DOELZ Mon Feb 17 19:12:49 EST 1992 Article: 369 of bit.listserv.info-gcg Path: bronze!news.cs.indiana.edu!spool.mu.edu!uunet!paladin.american.edu!auvm!COMP.BIOZ.UNIBAS.CH!DOELZ From: doelz@COMP.BIOZ.UNIBAS.CH Newsgroups: bit.listserv.info-gcg Subject: RE: embl on internet? Message-ID: <9202171401.AA00803@comp.bioz.unibas.ch> Date: 17 Feb 92 13:00:00 GMT Article-I.D.: comp.9202171401.AA00803 Sender: "INFO-GCG: GCG Genetics Software Discussion" Reply-To: doelz@COMP.BIOZ.UNIBAS.CH Lines: 83 Comments: Gated by NETNEWS@AUVM.AMERICAN.EDU X400-Received: by mta chx400.switch.ch in /PRMD=switch/ADMD=arcom/C=CH/; Relayed; Mon, 17 Feb 1992 14:42:02 +0100 X400-Received: by /PRMD=switch/ADMD=arcom/C=CH/; Relayed; Mon, 17 Feb 1992 14:00:00 +0100 X400-Received: by /PRMD=SWITCH/ADMD=ARCOM/C=CH/; Relayed; Mon, 17 Feb 1992 15:01:09 +0100 X400-Received: by /PRMD=SWITCH/ADMD=ARCOM/C=CH/; Relayed; Mon, 17 Feb 1992 15:01:07 +0100 X400-Originator: doelz@comp.bioz.unibas.ch X400-Mts-Identifier: [/PRMD=switch/ADMD=arcom/C=CH/;<9202171401.AA00803 @comp.bioz.un] X400-Content-Type: P2-1984 (2) Content-Identifier: RE: embl on i... > Can it be accessed by anonymous FTP? The EMBL file server contains a lot of data which are partially available on Molecular Biology Archives all over the world. E.g. on bioftp.unibas.ch (131.152.1.7) you will find the EMBL database, the updates to the last EMBL database tape release, and a collection of other databases. The files in the EMBnet directories are formatted so that you might use them with either PIR or GCG software. Be sure to read the README's if you use VAX/VMS systems. Regards Reinhard PS: This server is not funded by EMBnet. It is a box financed by the biocenter and is kept up with no staff. All who tried last week might have been disappointed because there was a hardware problem. ************************************************************************ Dr. Reinhard Doelz * EAN doelz@urz.unibas.ch Biocomputing * DECNET 20579::48130::doelz Biozentrum der Universitaet * X25 psi%022846211142::embnet Klingelbergstrasse 70 * FAX x41 61 261- 6760 CH 4056 Basel * TEL x41 61 267- 2076 or 2247 ************************************************************************ Setup of the Server bioftp.unibas.ch ==================================== ~/ +-------------------+---------------------+ | | biology programs +-------------+-----------+------------+ source code | | | uu and zoo cd EMBnet database QUERY system The last EMBL CD-ROM | | (resource permitting | +------------------------+ - drive used elsewhere) | | | | +---------+-----------+--------------------+ | | | | | | Xembl_flat database Xembl_form Xembl | | | | | | The current | The current | | Xembl and XXembl | Xembl and XXembl | | database in EMBL | database in PIR | | flat file format | format (also GCG) | | | | | +-------+------+-+ +--------------+----+------+ | | | | | | | | embl pir swissprot data.dir indices.dir (others) | | | | | | | | Current databases in PIR | indices of current scratch | format (also GCG suited) | Xembl and XXembl files | | database in EMBL not needed | | format | +----+----+----+----+----+----+-+--+----+----+----+----+----+ | fun inv mam org phg pln pri pro rod syn una vrl vrt | Entries in EMBL format, *ONE PER FILE*. The files are named | using the entry code as file name. NEW in the next release; | extension 'dat', update to existing release, extension 'upd'. | | | ++++++----+++++++--------++++++------------------------------------+ |||||| ||||||| |||||| |||||5srna||||||gcg_codon|||||prosite These databases are ||||aaid |||||haemb ||||resenzym maintained,updated, |||alu ||||limb |||smallrna but not entirely ||ecd |||ngdd ||tfd produced by |enzyme ||pkinases |trna Dr. A. Bairoch, epd |+------info references Department of fly | +++ Medical Biochemistry, +++++-----+ ++ ||| University of Geneva, ||||news || ||fans_ref Geneva, Switzerland. |||clones || |journals_toc bairoch@cmu.unige.ch ||cytofeat || seqanalref |flybase |articles stocks various