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To:	GILBERTD@IUBACS.bitnet
Subj:	Automatic response to : HELP PROTEINDATA

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Subject: Automatic response to : HELP PROTEINDATA
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HELP PROTEINDATA
 
The following files are available in the ProteinData directory:
 
     o    Protein Data Bank (Brookhaven) coordinate entries
 
          BRK.DIR         - list of BRK entry names
          BRKNEW.DIR      - list of new/changed entries in latest release
          BROOKDIR.DOC    - header records for each BRK entry
          OBSLTE.DOC      - list of obsolete entries
          protein.BRK     - structure coordinates
          protein.BRK_MOD - model structure coordinates
          NEWSLETTER.DOC  - latest PDB Newsletter
          NEWSLETTER.49   - NewsLetter 49 (July 1989)
 
          examples: get PROTEINDATA:BROOKDIR.DOC
                    get PROTEINDATA:2SEC.BRK
 
     o    Coordinates of protein structures determined by x-ray
          crystallography at EMBL, in Brookhaven format.
 
          ROP1.BRK - rop wild type
 
          example: get PROTEINDATA:ROP1.BRK
 
     o    Secondary structure digest of Protein Data Bank (Brookhaven)
          protein files, derived by a pattern recognition
          program DSSP (Definition of Protein Secondary Structure).
 
          The protein.DSSP files do not exist if the entry is for a
          protein, and at least the backbone coordinates are known.
 
          DSSP.DIR      - list of DSSP filenames
          protein.DSSP  - secondary structure for one protein
 
          example: get PROTEINDATA:1MBN.DSSP
 
     o    Model coordinates from the 1986 EMBO course on proteins design.
 
          TINY.BRK_MOD - tiny TIM
          BABA.BRK_MOD - babarellin
          BEAL.BRK_MOD - betaalphacin
          BUND.BRK_MOD - bundle
          FXNM.BRK_MOD - mutated flavodoxin
          FXNI.BRK_MOD - idealized flavodoxin
          RCU1.BRK_MOD - copper-binding rop
 
          example: get PROTEINDATA:TINY.BRK_MOD