Catalogue of Molecular Biology Programs Release 6.1 23 Jul 1999 All thanks are in the file biocatal.thanks. ===================================================================== AC BC00415 NAME ADE-4 DOMAIN Multivariate analysis DESCRIPTION ADE-4 is a multivariate analysis and graphical display DESCRIPTION software package for Macintosh micro-computers AUTHOR Thioulouse J., Chessel D., Doledec S., Olivier J.M. RA Thioulouse J., Doledec S., Chessel D.,Olivier J.M.; RT "ADE software: multivariate analysis and graphical RT display of environmental data."; RL In: Guariso G. & Rizzoli A. (Eds) Software per l'ambiente, RL Patron editore, Bologne, pp. 57-62 (1995). RA Thioulouse J., Lobry J.R.; RT "Co-inertia analysis of amino-acid physico-chemical RT properties and protein composition with the ADE package."; RL Comp. Appl. Biosci. 11(3):321-329(1995). RX SeqAnalRef; THIJ9501. ADDRESS Jean Michel Olivier ADDRESS Laboratoire d'Ecologie des Eaux Douces et des Grands Fleuves ADDRESS URA CNRS 1974, Universite Lyon 1 ADDRESS 69622 Villeurbanne Cedex, France ADDRESS Fax: (33) 72 43 11 41 - Tel: (33) 72 43 13 19 CONTACT Jean-Michel.Olivier@biomserv.univ-lyon1.fr SITE ftp anonymous biom3.univ-lyon1.fr SITE Directory /pub/mac/ADE/ADE4 SITE-CONTACT Jean.Thioulouse@biomserv.univ-lyon1.fr SITE WWW Server at URL http://biomserv.univ-lyon1.fr/ADE-4.html SITE-CONTACT Jean.Thioulouse@biomserv.univ-lyon1.fr OS Macintosh (MacOS) System 7 LANGUAGE C VOLUME 1-5 Mb REQUIRES System 7, 8Mb RAM COMMENTS ADE-4 is made of many stand alone applications, called modules. COMMENTS Each module (size 100-200Kb) can be used independently. AC BC00437 NAME MIM DOMAIN Genetic Linkage software DOMAIN Genetic and Physical Mapping DOMAIN Statistical significance DOMAIN Multivariate analysis DESCRIPTION MIM is a program to implement the Multipoint IBD method for DESCRIPTION partitioning genetic variance of quantitative traits to DESCRIPTION specific chromosomal regions using data on nuclear families. AUTHOR David E. Goldgar, Cathryn M. Lewis, Khosrow Gholami, AUTHOR Edward N. Kort RA Goldgar D.E.; RT "Multipoint analysis of human quantitative genetic variation."; RL Am. J. Hum. Genet. 45:957-967(1990). RA Goldgar D.E., Oniki R.O.; RT "Comparison of a multipoint identity by descent method with RT parametric multipoint linkage analysis for mapping quantitative traits."; RL Am. J. Hum. Genet. 50:598-606(1992). ADDRESS Cathryn Lewis, Ph.D. ADDRESS Genetic Epidemiology ADDRESS 391 Chipeta Way, D2 ADDRESS Salt Lake City, UT 84108, USA CONTACT edward@episun2.med.utah.edu SITE ftp anonymous morgan.med.utah.edu SITE Directory /pub/Mim SITE-CONTACT - OS UNIX LANGUAGE C VOLUME 250K bytes REQUIRES - COMMENTS Copies of the program may be obtained COMMENTS by contacting Edward Kort at edward@episun2.med.utah.edu AC BC00472 NAME WWW-Query DOMAIN WWW server DOMAIN Sequence analysis DOMAIN Searching databases DOMAIN Multivariate analysis SERVER http://acnuc.univ-lyon1.fr/ DESCRIPTION WWW-Query is a World Wide Web server for browsing sequence DESCRIPTION collections structured under the ACNUC format and for performing DESCRIPTION multivariate analyses on sequences. General collections DESCRIPTION (GenBank, EMBL and NBRF) as well as specialized data banks DESCRIPTION (NRSub, Hovergen, HIDB and MGDB) can be accessed. The DESCRIPTION system allows complex queries to be constructed and the DESCRIPTION result of each query, represented by a list of sequences, is DESCRIPTION stored on the server. It is then possible to reuse this list DESCRIPTION to compute analyses on sequences. AUTHOR Perriere G., Thioulouse, J. RA Perriere, G. Thioulouse, J.; RT "On-line tools for sequence retrieval and multivariate RT statistics in molecular biology."; RL Comput. Applic. Biosci. 12:63-69(1996). ADDRESS Laboratoire de Biometrie, Genetique et Biologie des ADDRESS Populations - UMR CNRS 5558 ADDRESS Universite Claude Bernard - Lyon 1 ADDRESS 43, bd. du 11 Novembre 1918 ADDRESS 69622 Villeurbanne Cedex ADDRESS France CONTACT perriere@biomserv.univ-lyon1.fr SITE WWW Server at URL http://acnuc.univ-lyon1.fr/ OS UNIX LANGUAGE C, Fortran VOLUME - REQUIRES - AC BC00601 NAME Jalview DOMAIN Sequence display DOMAIN Sequence analysis DOMAIN Protein sequence analysis DOMAIN Alignment editing and display DOMAIN Alignment browser DOMAIN JAVA DOMAIN Multivariate analysis DOMAIN WWW server SERVER http://circinus.ebi.ac.uk:6543/jalview DESCRIPTION A multiple sequence alignment viewer and editor. Alignments DESCRIPTION can be divided into subfamilies using a tree or by hand. DESCRIPTION Conservation can then be calculated using physico-chemical DESCRIPTION properties within subfamilies or across the whole alignment. DESCRIPTION Principal component analysis can also be used as an DESCRIPTION alternative way of clustering the sequences. An SRS server DESCRIPTION can be used to fetch and display the sequence features and DESCRIPTION any PDB structures listed. There is limited access to DESCRIPTION external programs including clustalw and jnet secondary DESCRIPTION structure prediction. AUTHOR Michele Clamp RT - ADDRESS The Sanger Centre ADDRESS Wellcome Trust Genome Campus ADDRESS Hinxton ADDRESS Cambs. ADDRESS CB10 1SA ADDRESS UK CONTACT michele@sanger.ac.uk SITE WWW Server at URL http://circinus.ebi.ac.uk:6543/jalview OS - LANGUAGE java1.1 VOLUME 300kb REQUIRES Java runtime environment