in prep for shipment, pcr2.p has been tested in the following cases 1: Data tw.blocked...no constraints. Outputfile: You have chosen to carry out a restricted maximum likelihood analysis. The number of traits is , 1 The number of fixed factors is , 2 The traits to be analysed: 1 The G-Matrices will not be constrained. for factor 1 1is fixed effect number 1 for factor 2 1is fixed effect number 1 for factor 2 2is fixed effect number 2 for factor 2 3is fixed effect number 3 for factor 2 4is fixed effect number 4 for factor 2 5is fixed effect number 5 for factor 2 6is fixed effect number 6 for factor 1 2is fixed effect number 2 502 records of data have been read 7 is the minimum value for the constant p Printing the last 20 records ID Father Mother NPS NMS FO Famid Popid Fixed...Phenotypes... 482 496 502 483 483 0 2 2 2 6.320 483 496 502 484 484 0 2 2 3 3.510 484 496 502 485 485 0 2 2 4 6.330 485 496 502 486 486 0 2 2 5 7.460 486 496 502 487 487 0 2 2 6 5.170 487 496 502 488 488 0 2 2 1 4.750 488 496 502 489 489 0 2 2 2 6.530 489 496 502 490 490 0 2 2 3 9.330 490 496 502 491 491 0 2 2 4 6.130 491 496 502 492 492 0 2 2 5 5.470 492 496 502 0 0 0 2 2 6 7.070 493 0 0 0 0 271 2 2 1 -99.000 494 0 0 0 0 307 2 2 2 -99.000 495 0 0 0 0 373 2 2 3 -99.000 496 0 0 0 0 433 2 2 4 -99.000 497 0 0 0 0 307 2 2 5 -99.000 498 0 0 0 0 319 2 2 6 -99.000 499 0 0 0 0 271 2 2 1 -99.000 500 0 0 0 0 282 2 2 2 -99.000 501 0 0 0 0 289 2 2 3 -99.000 502 0 0 0 0 295 2 2 4 -99.000 Family 1 has 270 individuals; 260 observations. Family 2 has 232 individuals; 220 observations. Iteration 1 LogLike -796.726 Iteration 2 LogLike -524.940 Iteration 3 LogLike -524.917 The Loglikelihood has been maximized. pcout: At iteration 0 The current parameter values: Additive, population 1: 0.000 Additive, population 2: 0.000 Dominance, population 1: 0.000 Dominance, population 2: 0.000 Environmental, population 1: 1.000 Environmental, population 2: 1.000 At iteration 1 The current parameter values: Additive, population 1: 0.109 Additive, population 2: 0.252 Dominance, population 1: 0.441 Dominance, population 2: 1.930 Environmental, population 1: 2.728 Environmental, population 2: 1.212 At iteration 2 The current parameter values: Additive, population 1: 0.076 Additive, population 2: 0.180 Dominance, population 1: 0.512 Dominance, population 2: 1.893 Environmental, population 1: 2.686 Environmental, population 2: 1.298 Convergence at iteration 3 log likelihood = -524.917 Estimates of fixed effects 7.647 -0.927 0.018 -0.170 -0.629 -3.272 -3.474 additive genetic components for population 1 0.0759 additive genetic components for population 2 0.1803 dominance components for population 1 0.5122 dominance components for population 2 1.8928 environmental components for population 1 2.6858 environmental components for population 2 1.2976 dataset tw.blocked nothing zeroed; additive constrained to be the same. Outputfile You have chosen to carry out a restricted maximum likelihood analysis. The number of traits is , 1 The number of fixed factors is , 2 The traits to be analysed: 1 The following G-Matrix elements will be constrained to be the same in both populations: 1 for factor 1 1is fixed effect number 1 for factor 2 1is fixed effect number 1 for factor 2 2is fixed effect number 2 for factor 2 3is fixed effect number 3 for factor 2 4is fixed effect number 4 for factor 2 5is fixed effect number 5 for factor 2 6is fixed effect number 6 for factor 1 2is fixed effect number 2 502 records of data have been read 7 is the minimum value for the constant p Printing the last 20 records ID Father Mother NPS NMS FO Famid Popid Fixed...Phenotypes... 482 496 502 483 483 0 2 2 2 6.320 483 496 502 484 484 0 2 2 3 3.510 484 496 502 485 485 0 2 2 4 6.330 485 496 502 486 486 0 2 2 5 7.460 486 496 502 487 487 0 2 2 6 5.170 487 496 502 488 488 0 2 2 1 4.750 488 496 502 489 489 0 2 2 2 6.530 489 496 502 490 490 0 2 2 3 9.330 490 496 502 491 491 0 2 2 4 6.130 491 496 502 492 492 0 2 2 5 5.470 492 496 502 0 0 0 2 2 6 7.070 493 0 0 0 0 271 2 2 1 -99.000 494 0 0 0 0 307 2 2 2 -99.000 495 0 0 0 0 373 2 2 3 -99.000 496 0 0 0 0 433 2 2 4 -99.000 497 0 0 0 0 307 2 2 5 -99.000 498 0 0 0 0 319 2 2 6 -99.000 499 0 0 0 0 271 2 2 1 -99.000 500 0 0 0 0 282 2 2 2 -99.000 501 0 0 0 0 289 2 2 3 -99.000 502 0 0 0 0 295 2 2 4 -99.000 Family 1 has 270 individuals; 260 observations. Family 2 has 232 individuals; 220 observations. Iteration 1 LogLike -796.726 Iteration 2 LogLike -525.011 Iteration 3 LogLike -524.947 Iteration 4 LogLike -524.944 The Loglikelihood has been maximized. The pcout file: At iteration 0 The current parameter values: Additive, population 1: 0.000 Additive, population 2: 0.000 Dominance, population 1: 0.000 Dominance, population 2: 0.000 Environmental, population 1: 1.000 Environmental, population 2: 1.000 At iteration 1 The current parameter values: Additive, population 1: 0.169 Additive, population 2: 0.169 Dominance, population 1: 0.342 Dominance, population 2: 2.066 Environmental, population 1: 2.773 Environmental, population 2: 1.152 At iteration 2 The current parameter values: Additive, population 1: 0.092 Additive, population 2: 0.092 Dominance, population 1: 0.501 Dominance, population 2: 1.992 Environmental, population 1: 2.686 Environmental, population 2: 1.267 At iteration 3 The current parameter values: Additive, population 1: 0.113 Additive, population 2: 0.113 Dominance, population 1: 0.469 Dominance, population 2: 1.985 Environmental, population 1: 2.700 Environmental, population 2: 1.262 Convergence at iteration 4 log likelihood = -524.944 Estimates of fixed effects 7.646 -0.921 0.017 -0.170 -0.628 -3.272 -3.474 additive genetic components for population 1 0.1131 additive genetic components for population 2 0.1131 dominance components for population 1 0.4688 dominance components for population 2 1.9851 environmental components for population 1 2.6996 environmental components for population 2 1.2618