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GMOD is supported by a specific cooperative agreement from the USDA Agricultural Research Service, and by NIH grants co-funded from the National Human Genome Research Institute and the National Institute of General Medical Sciences.
Generic Model Organism Database Construction Set
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GMOD Resources
Demos Links to Related Projects
GMOD is supported by a specific cooperative agreement from the USDA Agricultural Research Service, and by NIH grants co-funded from the National Human Genome Research Institute and the National Institute of General Medical Sciences.
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Generic Model Organism Database MeetingMay 16-17, 2005
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| 9:00am | Introductions Scott Cain, GMOD coordinator |
| 9:15 | Project updates (short!) |
| 10:00 | Break |
| 10:15 | My trip to France (setting up ParameciumDB) Scott Cain |
| 10:45 | Textpresso update Eimear Kenney |
| 11:15 | Pathway Tools Peter Karp |
| 12:00 | Lunch |
| 1:15 | Porting CHADO and GMOD Tools to Oracle and Integration with dictyBase Eric Just |
| 2:00 | chado design, XSL, XML, XORT Pinglei Zhou and Chris Mungall |
| 2:45 | Break |
| 3:00 | BioMart and chado Arek Kasprzyk |
| 3:45 | Turnkey Brian O'Connor |
| 4:30 | Wrap up for the day--items to discuss over dinner Scott Cain |
Tuesday, May 17
| 9:00 | Comparative genome annotation of D. pseudoobscura and its
implementation in chado Peili Zhang |
| 9:45 | sybil for comparative genomics Samuel Angiuoli |
| 10:30 | Break |
| 10:45 | Apollo Update Nomi Harris and Mark Gibson |
| 10:45 | Transposon Insertions and Transposon Constructs editor Frank Smutniak |
| 12:00 | Lunch |
| 1:15 | Bio::GMOD and standard URLs Todd Harris |
| 2:15 | Interaction Browsers (a presentation prepared at the meeting because the topic came up) Ben Faga |
| 2:30 | Break |
| 3:00 | Das2 Lincoln Stein |
| 3:45 | Package Management for Bioinformatics Libraries, Applications and Data Allen Day |
| 4:30 | Wrap up; next meeting, etc (with notes in the presentation from items discussed) Lincoln Stein and Scott Cain |
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cain@cshl.edu |
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cain@cshl.org |