Read Me

TreeAnalyzer is a free software package used in phylogenetic tree comparison. 
It is implemented in Java. 

*** Compile ***
1. Install J2sdk1.4.1 or above version and download the TreeAnalyzer1213.zip. 
2. User winzip or other tools to unzip the files. 
3. The package contain all the necessary java source code and two sample files
   named "Salmonella3repprimersNEXUS.txt" and "SalmonellaRiboprintNEXUS.txt".
4. run the command: 
	javac *.java
5. All the class files will be created. 

*** Run ***
1. Type "java TreeAnalyzer" to start the software package. 
2. Read "Salmonella3repprimersNEXUS.txt" and "SalmonellaRiboprintNEXUS.txt" by 
   selecting the Menu Item "New" and do operations. 

 
Date: Tue, 16 Mar 2004 12:56:56 -0800 (PST)
From: Shiming Dong <dong_sm@yahoo.com>